Hg_chrom3_TN10mRNA_6545
Organism: Heterodera glycines Gene Locus: chr3:11395033-11398198 Feature type: polypeptideProtein Sequence
Length: 664
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.963 | 1.086 | 0.685 | 0.519 | 0.803 | 1.313 | 0.699 | 0.828 | 0.469 | 0.936 | 0.456 | 1.506 | 0.92 | 2.722 | 0.799 | 1.097 | 1.704 | 1.095 | 0.811 | 0.576 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6206
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.979
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.283
|
0.348
|
0.059
|
0.556
|
0.479
|
0.524
|
0.475
|
0.014
|
0.324
|
0.483
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003536
|
2.000
|
1.000
|
Hsc_gene_6145.t1
|
Hsc_gene_5382.t1
|
— |
Q22943.2 Platelet-activating factor acetylhydrolase homolog 2 [Caenorhabditis elegans]
|
KAI1718798.1 platelet-activating factor acetylhydrolase, isoform II domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.854|GO:0003674_0.766|GO:0005575_0.636|GO:0110165_0.633|GO:0016020_0.558|GO:0005622_0.526|GO:0071944_0.523
|
IPR029058+151-597_181-475+
|
— |
PF03403+156-583+Platelet-activating_factor_acetylhydrolase,_isoform_II
|
— |
PTHR10272+152-641+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-173;621-664
|
1.000
|
174-620
|
9ya0_IC
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.878
|
71206.320
|
5.638
|
-5.500
|
17.169
|
7.982
|
45.030
|
54.970
|
8.584
|
8.584
|
63.554
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
white
|
61.842
|
7.761
|
15.137
|
39.650
|
123.412
|
209.923
|
106.217
|
208.563
|
1.028
|
3.289
|
2.320
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.219
|
1.503
|
1.606
|
0.781
|
-0.972
|
— |
-0.825
|
— |
5.174
|
4.755
|
— | — |
No JSON data available for plots.