SCN Proteipedia

Hg_chrom3_TN10mRNA_6547

Organism: Heterodera glycines Gene Locus: chr3:11429000-11430759 Feature type: polypeptide

Protein Sequence

Length: 320

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.69	1.163	0.682	1.185	1.042	1.442	0.67	2.031	1.319	1.394	0.71	1.471	1.563	0.781	1.403	1.384	0.768	0.616	1.202	0.092	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_6208	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_Clustered	0.746

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	RRKR,RRRRR	—	—	—	—	—	—	0.000	—	—	0.343	0.234	0.101	0.510	0.209	0.044	0.180	0.070	0.056	0.615

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001851	3.000	1.000	Hsc_gene_4783.t1	—	—	Q62559.2 Intraflagellar transport protein 52 homolog [Mus musculus]	KAH7729956.1 intraflagellar transport protein 52 [Aphelenchus avenae]	No	-0.110

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.951\|GO:0009987_0.903\|GO:0005575_0.902\|GO:0110165_0.902\|GO:0005622_0.838\|GO:0016020_0.834\|GO:0043226_0.805\|GO:0043227_0.770\|GO:0071840_0.747\|GO:0016043_0.746\|GO:0051179_0.736\|GO:0051234_0.724\|GO:0006810_0.721\|GO:0051641_0.708\|GO:0006996_0.706\|GO:0051649_0.695\|GO:0033036_0.693\|GO:0070727_0.693\|GO:0008104_0.692\|GO:0030030_0.689\|GO:0044085_0.688\|GO:0016192_0.687\|GO:0120036_0.687\|GO:0071944_0.686\|GO:0022607_0.685\|GO:0046907_0.685\|GO:0007010_0.680\|GO:0007017_0.680\|GO:0033365_0.679\|GO:0051640_0.679\|GO:0051656_0.679\|GO:0005886_0.678\|GO:0048193_0.678\|GO:0000226_0.677\|GO:0007018_0.677\|GO:0030031_0.677\|GO:0120031_0.677\|GO:0070925_0.676\|GO:0010970_0.675\|GO:0030705_0.675\|GO:0031503_0.675\|GO:0051648_0.675\|GO:0051650_0.675\|GO:0099111_0.675\|GO:0001578_0.674\|GO:0005929_0.674\|GO:0006903_0.674\|GO:0030990_0.674\|GO:0032991_0.674\|GO:0035082_0.674\|GO:0035735_0.674\|GO:0042073_0.674\|GO:0042995_0.674\|GO:0044782_0.674\|GO:0048199_0.674\|GO:0060271_0.674\|GO:0061512_0.674\|GO:0097712_0.674\|GO:0098590_0.674\|GO:0120025_0.674\|GO:1905349_0.674\|GO:0035720_0.670\|GO:0043005_0.557\|GO:0140535_0.553\|GO:0030992_0.540\|GO:0032391_0.540\|GO:0035869_0.540\|GO:0097539_0.540\|GO:0097542_0.540\|GO:0097546_0.540\|GO:0097730_0.540\|GO:0097731_0.540\|GO:0097733_0.540	IPR039975+32-320+	—	—	—	PTHR12969+32-320+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	105-154	2.000	1-104;155-320	5fms_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.839	36211.420	8.303	11.500	25.625	11.562	50.625	49.375	15.625	10.000	46.250

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	magenta	28.561	71.647	16.206	35.105	36.956	11.395	26.067	18.870	0.000	43.861	25.064

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.379	-1.167	1.227	—	-1.681	1.202	—	0.608	—	5.991	—	—	—

No JSON data available for plots.

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