Hg_chrom3_TN10mRNA_6548
Organism: Heterodera glycines Gene Locus: chr3:11433301-11434970 Feature type: polypeptideProtein Sequence
Length: 336
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.419 | 1.592 | 1.461 | 0.821 | 0.992 | 1.068 | 0.992 | 1.935 | 1.19 | 1.448 | 0.271 | 1.401 | 1.075 | 0.401 | 1.033 | 0.298 | 0.976 | 1.082 | 0.229 | 0.438 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6209
|
— | — |
1.444
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.528
|
0.459
|
0.013
|
0.610
|
0.089
|
0.083
|
0.067
|
0.007
|
0.228
|
0.252
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001997
|
3.000
|
1.000
|
Hsc_gene_25640.t1
|
— | — | — | — |
No
|
-0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR002110+59-88_114-196_131-160_131-163_164-194_205-294_233-262_233-265_266-295+|IPR036770+6-336_62-319+
|
SM00248+59-88_131-160_164-194_233-262_266-295+
|
PF12796+114-196_205-294+Ankyrin_repeats_(3_copies)
|
— |
PTHR24178+63-191+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
314-336
|
1.000
|
1-313
|
9ivp_VA
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.853
|
36435.980
|
4.505
|
-17.500
|
24.702
|
9.524
|
43.750
|
56.250
|
10.714
|
13.988
|
55.060
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
393.002
|
14.053
|
27.634
|
47.176
|
136.435
|
1259.364
|
81.388
|
2388.617
|
9.251
|
229.443
|
135.075
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.739
|
1.609
|
0.885
|
1.500
|
3.220
|
-3.940
|
0.811
|
-4.727
|
— | — | — | — | — |
No JSON data available for plots.