Hg_chrom3_TN10mRNA_6552
Organism: Heterodera glycines Gene Locus: chr3:11458196-11459879 Feature type: polypeptideProtein Sequence
Length: 195
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 1.073 | 0.839 | 1.238 | 1.197 | 1.446 | 0.855 | 1.026 | 1.14 | 0.762 | 1.166 | 1.207 | 1.567 | 0.888 | 1.465 | 0.952 | 0.757 | 0.855 | 0.394 | 0.603 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6213
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRSSAFGQKLRRDGK,RKGQLPKEQMQQQKAEKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.462
|
0.072
|
0.022
|
0.547
|
0.162
|
0.136
|
0.153
|
0.014
|
0.088
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001851
|
3.000
|
1.000
|
Hsc_gene_4783.t1
|
Hsc_gene_4783.t1
|
— |
Q9Y366.3 Intraflagellar transport protein 52 homolog [Homo sapiens]
|
KHN76535.1 Intraflagellar transport protein 52 -like protein [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.928|GO:0005575_0.922|GO:0110165_0.917|GO:0009987_0.865|GO:0005622_0.858|GO:0016020_0.815|GO:0043226_0.810|GO:0043227_0.763|GO:0071840_0.744|GO:0016043_0.736|GO:0051179_0.718|GO:0006810_0.708|GO:0051234_0.708|GO:0051641_0.703|GO:0006996_0.698|GO:0044085_0.691|GO:0051649_0.690|GO:0033036_0.689|GO:0008104_0.688|GO:0070727_0.688|GO:0022607_0.686|GO:0071944_0.686|GO:0016192_0.683|GO:0030030_0.683|GO:0046907_0.681|GO:0120036_0.681|GO:0007010_0.679|GO:0007017_0.678|GO:0033365_0.678|GO:0051640_0.677|GO:0051656_0.677|GO:0007018_0.676|GO:0048193_0.676|GO:0000226_0.675|GO:0030031_0.675|GO:0070925_0.675|GO:0120031_0.675|GO:0001578_0.674|GO:0010970_0.674|GO:0030705_0.674|GO:0031503_0.674|GO:0099111_0.674|GO:0005886_0.673|GO:0005929_0.673|GO:0006903_0.673|GO:0030990_0.673|GO:0032991_0.673|GO:0035082_0.673|GO:0035735_0.673|GO:0042073_0.673|GO:0042995_0.673|GO:0044782_0.673|GO:0048199_0.673|GO:0051648_0.673|GO:0051650_0.673|GO:0060271_0.673|GO:0061512_0.673|GO:0097712_0.673|GO:0098590_0.673|GO:0120025_0.673|GO:1905349_0.673|GO:0035720_0.670|GO:0043005_0.555|GO:0140535_0.555|GO:0030992_0.540|GO:0032391_0.540|GO:0035869_0.540|GO:0097539_0.540|GO:0097542_0.540|GO:0097546_0.540|GO:0097730_0.540|GO:0097731_0.540|GO:0097733_0.540
|
IPR039975+1-161+
|
— | — | — |
PTHR12969+1-161+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;55-108
|
2.000
|
3-54;109-195
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.867
|
21907.930
|
8.814
|
8.000
|
28.718
|
10.256
|
50.256
|
49.744
|
16.923
|
11.795
|
49.231
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
brown
|
2.644
|
5.043
|
2.889
|
3.982
|
6.436
|
3.896
|
6.681
|
1.922
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
1.935
|
— | — | — | — | — |
No JSON data available for plots.