Hg_chrom3_TN10mRNA_6557
Organism: Heterodera glycines Gene Locus: chr3:11476377-11477239 Feature type: polypeptideProtein Sequence
Length: 189
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.923 | 0.738 | 0.77 | 1.277 | 0.529 | 2.171 | 0.882 | 0.265 | 1.293 | 0.858 | 1.283 | 1.556 | 1.029 | 1.119 | 1.404 | 0.68 | 0.954 | 1.042 | 0.814 | 0.934 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6218
|
— | — |
1.444
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKGWSPRSLESIKKKAQR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.706
|
0.296
|
0.116
|
0.348
|
0.143
|
0.046
|
0.043
|
0.013
|
0.147
|
0.211
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000540
|
5.000
|
2.000
|
Hsc_gene_12557.t1;Hsc_gene_8847.t1
|
— | — |
Q20875.1 Pre-mRNA-splicing factor ATP-dependent RNA helicase ddx-15 [Caenorhabditis elegans]
|
EDO32628.1 predicted protein [Nematostella vectensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.870|GO:0110165_0.859|GO:0005622_0.781|GO:0016020_0.743|GO:0008150_0.726|GO:0043226_0.722|GO:0043229_0.714|GO:0043227_0.678|GO:0043231_0.660|GO:0009987_0.643|GO:0005634_0.533|GO:0003674_0.518|GO:0008152_0.506
|
IPR001650+1-142_4-106_12-105+|IPR027417+2-126_12-131+
|
SM00490+4-106+
|
PF00271+12-105+Helicase_conserved_C-terminal_domain
|
— |
PTHR18934+11-132+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
186-189
|
1.000
|
1-185
|
8ro1_DX
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.520
|
21146.590
|
10.252
|
15.500
|
23.280
|
8.466
|
45.503
|
54.497
|
15.873
|
7.407
|
49.735
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
8.851
|
0.157
|
1.138
|
0.557
|
0.467
|
0.000
|
0.000
|
0.000
|
0.000
|
37.856
|
21.632
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.