Hg_chrom3_TN10mRNA_6563
Organism: Heterodera glycines Gene Locus: chr3:11508351-11511493 Feature type: polypeptideProtein Sequence
Length: 455
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.971 | 1.073 | 1.119 | 0.758 | 1.136 | 1.578 | 0.419 | 0.989 | 1.661 | 1.455 | 0.966 | 1.551 | 1.648 | 0.761 | 0.942 | 0.942 | 0.649 | 0.799 | 0.845 | 0.452 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6223
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.545
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.498
|
0.324
|
0.006
|
0.627
|
0.143
|
0.184
|
0.119
|
0.053
|
0.276
|
0.111
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000831
|
2.000
|
4.000
|
Hsc_gene_15100.t1;Hsc_gene_15103.t1;Hsc_gene_16226.t1;Hsc_gene_25786.t1
|
Hsc_gene_15100.t1;Hsc_gene_16226.t1;Hsc_gene_25786.t1
|
— | — |
KAI3415282.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.752|GO:0008150_0.746|GO:0110165_0.735|GO:0005622_0.634|GO:0009987_0.618|GO:0005737_0.544
|
IPR000210+15-126_21-98_21-129+|IPR002083+298-429+|IPR008974+294-454+|IPR011333+1-155_6-124+|IPR011705+133-243_137-240+
|
SM00225+21-129+|SM00875+133-243+
|
PF00651+15-126+BTB/POZ_domain|PF07707+137-240+BTB_And_C-terminal_Kelch
|
— |
PTHR45774+9-268+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
437-455
|
1.000
|
1-436
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.572
|
51676.510
|
5.689
|
-4.500
|
25.934
|
10.549
|
47.253
|
52.747
|
12.967
|
12.967
|
44.615
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
189.332
|
193.341
|
490.851
|
140.679
|
62.871
|
117.953
|
150.653
|
156.302
|
183.507
|
198.452
|
192.047
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.115
|
-0.596
|
-1.695
|
-1.194
|
0.923
|
0.359
|
— | — | — | — | — | — | — |
No JSON data available for plots.