Hg_chrom3_TN10mRNA_6564
Organism: Heterodera glycines Gene Locus: chr3:11518154-11521132 Feature type: polypeptideProtein Sequence
Length: 364
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.118 | 1.214 | 1.299 | 0.758 | 1.145 | 0.775 | 0.72 | 1.236 | 1.587 | 1.114 | 1.041 | 1.454 | 1.755 | 0.528 | 0.841 | 0.942 | 0.676 | 0.791 | 0.634 | 0.808 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6224
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.534
|
0.174
|
0.025
|
0.619
|
0.129
|
0.142
|
0.092
|
0.007
|
0.191
|
0.088
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008188
|
1.000
|
1.000
|
Hsc_gene_16227.t1
|
— | — |
O94889.3 Kelch-like protein 18 [Homo sapiens]
|
KAI3415369.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.762|GO:0005575_0.737|GO:0110165_0.713|GO:0009987_0.616|GO:0005622_0.581|GO:0005737_0.523|GO:0003674_0.518
|
IPR000210+20-124_22-99_22-129+|IPR011333+2-126_5-124+|IPR011705+132-218_135-202+
|
SM00225+22-129+|SM00875+132-218+
|
PF00651+20-124+BTB/POZ_domain|PF07707+135-202+BTB_And_C-terminal_Kelch
|
— |
PTHR45774+4-203+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-364
|
4eoz_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.575
|
40719.320
|
5.293
|
-6.500
|
27.473
|
12.363
|
46.429
|
53.571
|
13.462
|
14.011
|
48.901
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
15.840
|
3.845
|
10.243
|
11.201
|
20.672
|
22.742
|
44.030
|
11.761
|
0.000
|
22.613
|
12.922
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.186
|
1.409
|
— |
0.854
|
— |
0.961
|
-1.054
|
2.047
|
— |
4.343
|
— | — | — |
No JSON data available for plots.