Hg_chrom3_TN10mRNA_6565
Organism: Heterodera glycines Gene Locus: chr3:11532816-11533312 Feature type: polypeptideProtein Sequence
Length: 99
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.822 | 0.705 | 0.918 | 0.697 | 1.178 | 0.0 | 0.361 | 4.04 | 0.898 | 1.365 | 0.153 | 1.783 | 1.964 | 0.971 | 1.443 | 0.577 | 1.821 | 1.224 | 2.331 | 0.297 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6225
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.757
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.632
|
0.470
|
0.179
|
0.593
|
0.127
|
0.043
|
0.019
|
0.065
|
0.040
|
0.142
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000560
|
7.000
|
0.000
|
0.000
|
— | — |
Q9BVA6.2 Protein adenylyltransferase FICD [Homo sapiens]
|
XP_053650749.1 protein adenylyltransferase Fic-like [Cherax quadricarinatus]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.920|GO:0005575_0.874|GO:0110165_0.867|GO:0003674_0.810|GO:0050896_0.809|GO:0016020_0.739|GO:0006950_0.724|GO:0003824_0.683|GO:0071944_0.678|GO:0016740_0.658|GO:0005886_0.657|GO:0016772_0.650|GO:0016779_0.650|GO:0070566_0.650|GO:0070733_0.650|GO:0009987_0.611|GO:0005622_0.583|GO:0005737_0.567|GO:0005488_0.542|GO:0051716_0.532|GO:0005515_0.524|GO:0008152_0.523|GO:0043226_0.520|GO:0043229_0.505|GO:0044238_0.502
|
IPR003812+1-99_2-92+|IPR036597+1-96_2-94+|IPR040198+2-94+
|
— |
PF02661+2-92+Fic/DOC_family
|
— |
PTHR13504+2-94+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-99
|
6zmd_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.812
|
11502.150
|
6.486
|
0.000
|
28.283
|
19.192
|
46.465
|
53.535
|
16.162
|
12.121
|
48.485
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
red
|
19.218
|
9.887
|
28.742
|
23.046
|
22.883
|
19.755
|
20.667
|
21.087
|
4.146
|
26.195
|
16.745
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.311
|
1.085
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.