Hg_chrom3_TN10mRNA_6566
Organism: Heterodera glycines Gene Locus: chr3:11534642-11535899 Feature type: polypeptideProtein Sequence
Length: 103
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.564 | 1.355 | 0.883 | 1.339 | 1.294 | 0.0 | 0.462 | 2.913 | 1.294 | 1.706 | 0.147 | 1.142 | 1.888 | 1.307 | 0.991 | 0.416 | 1.592 | 1.03 | 1.494 | 0.571 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6226
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.516
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.585
|
0.472
|
0.090
|
0.733
|
0.188
|
0.107
|
0.025
|
0.103
|
0.041
|
0.118
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000560
|
7.000
|
0.000
|
0.000
|
— | — |
B4F6I5.1 Protein adenylyltransferase FICD [Xenopus tropicalis]
|
XP_065570264.1 protein adenylyltransferase FICD-like [Artemia franciscana]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.929|GO:0005575_0.888|GO:0110165_0.881|GO:0050896_0.831|GO:0003674_0.816|GO:0016020_0.758|GO:0006950_0.732|GO:0071944_0.694|GO:0003824_0.682|GO:0005886_0.677|GO:0016740_0.660|GO:0016772_0.650|GO:0016779_0.650|GO:0070566_0.650|GO:0070733_0.650|GO:0009987_0.627|GO:0005622_0.569|GO:0005737_0.569|GO:0051716_0.566|GO:0005488_0.547|GO:0005515_0.545|GO:0008152_0.522|GO:0043226_0.510|GO:0044238_0.502
|
IPR003812+1-103_2-92+|IPR036597+1-93_1-103+|IPR040198+2-94+
|
— |
PF02661+2-92+Fic/DOC_family
|
— |
PTHR13504+2-94+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-103
|
3cuc_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.836
|
11826.580
|
5.037
|
-4.000
|
24.272
|
16.505
|
42.718
|
57.282
|
11.650
|
12.621
|
49.515
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
brown
|
29.498
|
36.774
|
66.765
|
40.905
|
36.875
|
40.893
|
19.987
|
41.956
|
25.181
|
3.608
|
12.854
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.629
|
— |
-0.598
|
— | — |
-1.022
|
— |
-0.928
|
— | — | — | — | — |
No JSON data available for plots.