Hg_chrom3_TN10mRNA_6567
Organism: Heterodera glycines Gene Locus: chr3:11536881-11537528 Feature type: polypeptideProtein Sequence
Length: 147
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.791 | 1.424 | 0.989 | 0.704 | 1.247 | 0.174 | 0.648 | 3.401 | 1.058 | 1.471 | 0.515 | 1.601 | 1.512 | 0.785 | 1.111 | 0.389 | 1.338 | 0.825 | 1.047 | 1.401 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6227
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.772
|
0.348
|
0.090
|
0.667
|
0.118
|
0.051
|
0.047
|
0.015
|
0.056
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000560
|
7.000
|
0.000
|
0.000
|
— | — |
Q9BVA6.2 Protein adenylyltransferase FICD [Homo sapiens]
|
CAB3246148.1 adenosine monophosphate-protein transferase FICD-like [Phallusia mammillata]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.930|GO:0003674_0.866|GO:0005575_0.841|GO:0110165_0.835|GO:0003824_0.782|GO:0050896_0.778|GO:0016020_0.740|GO:0006950_0.726|GO:0016740_0.700|GO:0071944_0.683|GO:0005886_0.661|GO:0016772_0.660|GO:0016779_0.654|GO:0070566_0.650|GO:0070733_0.650|GO:0009987_0.627|GO:0008152_0.598|GO:0005622_0.584|GO:0005737_0.583|GO:0044238_0.559|GO:0005488_0.551|GO:0051716_0.530|GO:0043226_0.523|GO:0043170_0.521|GO:0005515_0.511|GO:0043227_0.510|GO:0019538_0.508|GO:0043229_0.507
|
IPR003812+1-139_2-92+|IPR036597+1-143_1-145+|IPR040198+2-142+
|
— |
PF02661+2-92+Fic/DOC_family
|
— |
PTHR13504+2-142+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-147
|
3cuc_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.724
|
17009.300
|
6.326
|
-1.000
|
28.571
|
18.367
|
46.259
|
53.741
|
15.646
|
12.925
|
46.259
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
88.820
|
59.613
|
86.631
|
75.796
|
57.807
|
70.557
|
30.480
|
50.006
|
198.180
|
78.366
|
129.715
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.311
|
— | — |
-0.424
|
— |
-1.204
|
-0.602
|
-0.575
|
— | — | — | — | — |
No JSON data available for plots.