Hg_chrom3_TN10mRNA_6568
Organism: Heterodera glycines Gene Locus: chr3:11536896-11537877 Feature type: polypeptideProtein Sequence
Length: 188
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.928 | 1.361 | 0.967 | 0.55 | 1.152 | 0.818 | 0.57 | 2.66 | 1.064 | 1.438 | 0.725 | 1.564 | 1.625 | 0.716 | 1.086 | 0.38 | 1.134 | 0.725 | 1.227 | 1.564 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6227
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.718
|
0.357
|
0.142
|
0.666
|
0.092
|
0.030
|
0.044
|
0.005
|
0.060
|
0.185
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000560
|
7.000
|
0.000
|
0.000
|
— | — |
Q9BVA6.2 Protein adenylyltransferase FICD [Homo sapiens]
|
MCP4160808.1 Fic family protein [Deltaproteobacteria bacterium]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.936|GO:0003674_0.870|GO:0005575_0.848|GO:0110165_0.843|GO:0003824_0.791|GO:0050896_0.781|GO:0016020_0.749|GO:0006950_0.727|GO:0016740_0.706|GO:0071944_0.693|GO:0005886_0.674|GO:0016772_0.662|GO:0016779_0.655|GO:0070566_0.650|GO:0070733_0.650|GO:0009987_0.641|GO:0008152_0.601|GO:0005622_0.599|GO:0005737_0.592|GO:0044238_0.563|GO:0005488_0.556|GO:0043226_0.533|GO:0051716_0.531|GO:0043170_0.526|GO:0005515_0.521|GO:0043229_0.517|GO:0019538_0.515|GO:0043227_0.515|GO:0043231_0.504
|
IPR003812+38-133_38-180+|IPR036597+14-186_35-183+|IPR040198+36-183+
|
— |
PF02661+38-133+Fic/DOC_family
|
— |
PTHR13504+36-183+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-188
|
3cuc_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.645
|
21915.940
|
6.655
|
1.000
|
27.660
|
18.085
|
46.277
|
53.723
|
15.426
|
12.234
|
43.617
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
88.820
|
59.613
|
86.631
|
75.796
|
57.807
|
70.557
|
30.480
|
50.006
|
198.180
|
78.366
|
129.715
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.311
|
— | — |
-0.424
|
— |
-1.204
|
-0.602
|
-0.575
|
— | — | — | — | — |
No JSON data available for plots.