Hg_chrom3_TN10mRNA_6570
Organism: Heterodera glycines Gene Locus: chr3:11539143-11541527 Feature type: polypeptideProtein Sequence
Length: 199
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.461 | 0.701 | 1.096 | 0.52 | 0.67 | 0.902 | 0.419 | 1.256 | 1.563 | 0.951 | 0.914 | 1.182 | 0.838 | 1.256 | 1.128 | 1.22 | 0.989 | 1.294 | 0.773 | 0.591 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6228
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKMDYQMEHYVWKRRSD
|
— | — | — | — | — | — |
0.000
|
— | — |
0.422
|
0.271
|
0.051
|
0.579
|
0.065
|
0.045
|
0.057
|
0.005
|
0.043
|
0.095
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003699
|
2.000
|
1.000
|
Hsc_gene_12127.t1
|
Hsc_gene_12127.t1;Hsc_gene_12130.t1;Hsc_gene_12130.t2;Hsc_gene_15091.t4
|
— |
A8Q2H5.2 Small ribosomal subunit protein uS2 [Brugia malayi]
|
XP_020305975.1 40S ribosomal protein SA, variant [Loa loa];EJD75092.1 40S ribosomal protein SA, variant [Loa loa]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412|GO:0015935
|
GO:0005575_0.897|GO:0110165_0.888|GO:0005622_0.778|GO:0005737_0.689|GO:0043226_0.669|GO:0008150_0.661|GO:0043229_0.658|GO:0003674_0.613|GO:0016020_0.594|GO:0005829_0.537|GO:0009987_0.506
|
IPR001865+15-33_18-163_23-116_45-54_94-111_119-136_136-147_157-171+|IPR005707+1-166+|IPR023591+14-165+
|
— |
PF00318+23-116+Ribosomal_protein_S2
|
G3DSA:3.40.50.10490:FF:000030+14-172+30S_ribosomal_protein_S2
|
PTHR11489+1-166+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-199
|
6w2t_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.765
|
21683.930
|
8.701
|
5.500
|
24.121
|
8.543
|
45.226
|
54.774
|
14.070
|
10.050
|
56.281
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
229.967
|
222.107
|
266.240
|
257.621
|
250.092
|
222.888
|
283.135
|
257.214
|
187.784
|
205.530
|
197.925
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
0.355
|
— |
0.281
|
— | — | — | — | — |
No JSON data available for plots.