Hg_chrom3_TN10mRNA_6572
Organism: Heterodera glycines Gene Locus: chr3:11555039-11557976 Feature type: polypeptideProtein Sequence
Length: 605
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.923 | 1.461 | 0.962 | 0.969 | 1.102 | 0.72 | 0.669 | 0.909 | 1.653 | 1.273 | 1.152 | 1.07 | 1.791 | 0.636 | 0.978 | 1.181 | 0.705 | 0.601 | 1.017 | 0.632 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6230
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.465
|
0.260
|
0.014
|
0.573
|
0.246
|
0.169
|
0.123
|
0.112
|
0.164
|
0.216
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003681
|
2.000
|
1.000
|
Hsc_gene_22666.t1
|
Hsc_gene_22666.t1
|
— |
A9JRD8.2 BTB/POZ domain-containing protein 6-A [Danio rerio]
|
KAI3416310.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.789|GO:0110165_0.785|GO:0005622_0.730|GO:0008150_0.689|GO:0005737_0.613|GO:0009987_0.587|GO:0043226_0.571|GO:0043229_0.547
|
IPR000210+6-109_8-76_8-114+|IPR002083+272-408_277-389_277-400_429-561_434-542_452-562+|IPR008974+262-415_416-571+|IPR011333+1-140_4-109+|IPR011705+118-228_122-225+
|
SM00061+277-389_434-542+|SM00225+8-114+|SM00875+118-228+
|
PF00651+6-109+BTB/POZ_domain|PF07707+122-225+BTB_And_C-terminal_Kelch|PF22486+277-400_452-562+MATH_domain
|
— |
PTHR45774+1-260+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-605
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
68058.960
|
7.791
|
8.500
|
26.116
|
11.736
|
47.769
|
52.231
|
14.215
|
11.901
|
47.769
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
320.298
|
425.493
|
455.274
|
199.758
|
129.110
|
217.477
|
226.445
|
292.026
|
318.685
|
432.697
|
383.835
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.228
|
-1.079
|
-0.662
|
0.767
|
— |
0.318
|
— | — | — | — | — | — |
No JSON data available for plots.