Hg_chrom3_TN10mRNA_6573
Organism: Heterodera glycines Gene Locus: chr3:11566241-11566792 Feature type: polypeptideProtein Sequence
Length: 120
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.775 | 1.938 | 0.758 | 0.287 | 1.111 | 0.427 | 0.496 | 2.917 | 0.926 | 1.239 | 0.253 | 1.961 | 1.852 | 0.641 | 1.361 | 0.476 | 1.639 | 1.263 | 1.923 | 0.735 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6231
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.785
|
0.281
|
0.158
|
0.589
|
0.150
|
0.150
|
0.047
|
0.031
|
0.040
|
0.145
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000560
|
7.000
|
0.000
|
0.000
|
— | — |
Q9BVA6.2 Protein adenylyltransferase FICD [Homo sapiens]
|
AEI28383.1 FIC domain-containing protein, partial [Protopterus annectens]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.919|GO:0005575_0.862|GO:0110165_0.844|GO:0003674_0.825|GO:0050896_0.781|GO:0016020_0.737|GO:0006950_0.723|GO:0003824_0.710|GO:0016740_0.669|GO:0071944_0.665|GO:0016772_0.654|GO:0016779_0.650|GO:0070566_0.650|GO:0070733_0.650|GO:0005886_0.641|GO:0009987_0.615|GO:0005622_0.595|GO:0005737_0.588|GO:0008152_0.558|GO:0043226_0.541|GO:0005488_0.535|GO:0044238_0.524|GO:0051716_0.522|GO:0043229_0.520|GO:0043170_0.507|GO:0043227_0.507|GO:0043231_0.506|GO:0005515_0.503
|
IPR003812+1-120_2-92+|IPR036597+1-120_2-118+|IPR040198+2-118+
|
— |
PF02661+2-92+Fic/DOC_family
|
— |
PTHR13504+2-118+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-120
|
6i7i_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.592
|
13948.810
|
6.602
|
0.500
|
25.000
|
17.500
|
48.333
|
51.667
|
14.167
|
10.833
|
49.167
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
49.477
|
2.703
|
8.285
|
8.142
|
5.288
|
2.785
|
2.743
|
8.679
|
0.000
|
201.975
|
115.414
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.391
|
1.458
|
— | — | — | — |
1.539
|
-1.514
|
-8.460
|
— |
-5.100
|
— | — |
No JSON data available for plots.