Hg_chrom3_TN10mRNA_6574
Organism: Heterodera glycines Gene Locus: chr3:11569583-11574583 Feature type: polypeptideProtein Sequence
Length: 271
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.901 | 0.687 | 1.006 | 0.382 | 1.23 | 1.135 | 0.703 | 2.399 | 1.968 | 0.848 | 1.118 | 1.519 | 1.23 | 0.426 | 0.904 | 1.212 | 1.028 | 0.783 | 0.568 | 0.977 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6232
|
— | — |
1.556
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRK,KRQQPHVEGEKTKKKDG,KKMDYQMEHYVWKRRSD
|
— | — | — | — | — | — |
0.000
|
— | — |
0.784
|
0.255
|
0.050
|
0.193
|
0.076
|
0.059
|
0.109
|
0.026
|
0.095
|
0.573
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001999
|
4.000
|
0.000
|
0.000
|
Hsc_gene_12127.t1;Hsc_gene_12130.t1;Hsc_gene_12130.t2;Hsc_gene_15091.t4
|
— |
A8Q2H5.2 Small ribosomal subunit protein uS2 [Brugia malayi]
|
KAI6209540.1 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain-containing protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003755
|
GO:0005575_0.847|GO:0110165_0.835|GO:0005622_0.733|GO:0008150_0.653|GO:0005737_0.652|GO:0043226_0.649|GO:0016020_0.648|GO:0043229_0.628|GO:0003674_0.592|GO:0009987_0.535
|
IPR001179+106-175_111-174+|IPR023591+196-254+|IPR046357+68-184+|IPR051989+95-175+
|
— |
PF00254+106-175+FKBP-type_peptidyl-prolyl_cis-trans_isomerase
|
— |
PTHR46046+95-175+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-88
|
1.000
|
89-271
|
3bch_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.519
|
30569.680
|
6.971
|
3.500
|
29.520
|
13.284
|
51.661
|
48.339
|
16.605
|
12.915
|
45.387
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
332.259
|
27.898
|
65.221
|
59.793
|
33.303
|
25.392
|
23.191
|
128.987
|
22.097
|
1300.638
|
752.692
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.995
|
0.961
|
— |
-0.873
|
— | — |
2.245
|
-2.338
|
-6.014
|
— |
-4.737
|
— | — |
No JSON data available for plots.