Hg_chrom3_TN10mRNA_6575
Organism: Heterodera glycines Gene Locus: chr3:11575063-11579473 Feature type: polypeptideProtein Sequence
Length: 319
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.875 | 0.729 | 0.855 | 0.324 | 1.254 | 1.608 | 0.97 | 2.508 | 1.811 | 0.932 | 1.092 | 1.475 | 0.958 | 0.603 | 0.896 | 0.985 | 0.925 | 0.855 | 0.0 | 0.83 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6233
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.894
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
KKRK,KRQQPHVEGEKTKKKDG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.239
|
0.195
|
0.010
|
0.268
|
0.922
|
0.170
|
0.336
|
0.125
|
0.391
|
0.394
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001999
|
4.000
|
0.000
|
0.000
|
— | — |
P26885.2 Peptidyl-prolyl cis-trans isomerase FKBP2 [Homo sapiens]
|
KAI1724247.1 FKBP-type peptidyl-prolyl cis-trans isomerase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003755
|
GO:0005575_0.821|GO:0110165_0.820|GO:0005622_0.720|GO:0016020_0.699|GO:0008150_0.629|GO:0043226_0.628|GO:0003674_0.612|GO:0043229_0.612|GO:0043227_0.580|GO:0009987_0.566|GO:0043231_0.551|GO:0005737_0.539
|
IPR001179+220-308_225-312+|IPR046357+169-316+|IPR051989+208-315+
|
— |
PF00254+220-308+FKBP-type_peptidyl-prolyl_cis-trans_isomerase
|
— |
PTHR46046+208-315+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;154-237
|
2.000
|
3-153;238-319
|
2pbc_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.623
|
35434.200
|
7.233
|
6.000
|
28.840
|
11.285
|
50.784
|
49.216
|
16.614
|
12.226
|
45.768
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
pink
|
661.812
|
55.342
|
974.854
|
790.569
|
259.811
|
43.886
|
32.639
|
662.496
|
56.986
|
1795.337
|
1050.330
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.911
|
3.700
|
-0.194
|
-1.636
|
-2.551
|
— |
3.816
|
-4.202
|
-5.104
|
— |
-2.668
|
— | — |
No JSON data available for plots.