Hg_chrom3_TN10mRNA_6576
Organism: Heterodera glycines Gene Locus: chr3:11575063-11579473 Feature type: polypeptideProtein Sequence
Length: 318
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.878 | 0.731 | 0.858 | 0.325 | 1.258 | 1.532 | 0.973 | 2.516 | 1.817 | 0.935 | 1.096 | 1.48 | 0.961 | 0.605 | 0.898 | 0.988 | 0.928 | 0.858 | 0.0 | 0.832 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6233
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.894
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
KKRK,KRQQPHVEGEKTKKKDG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.229
|
0.199
|
0.011
|
0.265
|
0.925
|
0.185
|
0.345
|
0.127
|
0.388
|
0.389
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001999
|
4.000
|
0.000
|
0.000
|
— | — |
Q32PA9.1 Peptidyl-prolyl cis-trans isomerase FKBP2 [Bos taurus]
|
KAI1724247.1 FKBP-type peptidyl-prolyl cis-trans isomerase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003755
|
GO:0005575_0.819|GO:0110165_0.819|GO:0005622_0.716|GO:0016020_0.693|GO:0008150_0.630|GO:0043226_0.623|GO:0003674_0.616|GO:0043229_0.609|GO:0043227_0.571|GO:0009987_0.567|GO:0043231_0.549|GO:0005737_0.543
|
IPR001179+219-307_224-311+|IPR046357+168-312+|IPR051989+208-314+
|
— |
PF00254+219-307+FKBP-type_peptidyl-prolyl_cis-trans_isomerase
|
— |
PTHR46046+208-314+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;154-235
|
2.000
|
3-153;236-318
|
4nnr_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.626
|
35306.070
|
7.233
|
6.000
|
28.931
|
11.321
|
50.629
|
49.371
|
16.667
|
12.264
|
45.912
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
pink
|
661.812
|
55.342
|
974.854
|
790.569
|
259.811
|
43.886
|
32.639
|
662.496
|
56.986
|
1795.337
|
1050.330
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.911
|
3.700
|
-0.194
|
-1.636
|
-2.551
|
— |
3.816
|
-4.202
|
-5.104
|
— |
-2.668
|
— | — |
No JSON data available for plots.