Hg_chrom3_TN10mRNA_6580
Organism: Heterodera glycines Gene Locus: chr3:11604215-11605119 Feature type: polypeptideProtein Sequence
Length: 209
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.835 | 0.556 | 0.261 | 0.495 | 0.478 | 1.472 | 0.57 | 1.196 | 0.744 | 1.035 | 0.435 | 2.252 | 1.861 | 1.748 | 1.953 | 1.367 | 1.333 | 1.015 | 1.104 | 0.844 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6236
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.946
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
RRFVPQAKMMKTKRY,RRFVPRRFVPQAKMMKTKR
|
19-50
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.605
|
0.198
|
0.009
|
0.409
|
0.052
|
0.021
|
0.043
|
0.055
|
0.067
|
0.534
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001232
|
4.000
|
1.000
|
Hsc_gene_11986.t1
|
Hsc_gene_10218.t1;Hsc_gene_10218.t2;Hsc_gene_11986.t1;Hsc_gene_11986.t2;Hsc_gene_18920.t1;Hsc_gene_18920.t2;Hsc_gene_20657.t1;Hsc_gene_23891.t1;Hsc_gene_2931.t1;Hsc_gene_3996.t1;Hsc_gene_8868.t2
|
— | — | — |
CAF9920093
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-209
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.680
|
23714.480
|
11.565
|
19.500
|
19.139
|
13.397
|
44.976
|
55.024
|
14.833
|
4.306
|
50.718
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
43.517
|
19.105
|
15.683
|
11.449
|
11.383
|
11.267
|
8.100
|
15.263
|
1.896
|
154.371
|
89.025
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.876
|
— | — | — | — | — | — |
-6.481
|
— | — | — | — |
No JSON data available for plots.