Hg_chrom3_TN10mRNA_6591
Organism: Heterodera glycines Gene Locus: chr3:11650468-11653389 Feature type: polypeptideProtein Sequence
Length: 293
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.714 | 1.27 | 0.993 | 0.118 | 1.024 | 1.138 | 0.569 | 1.877 | 1.669 | 1.568 | 0.931 | 1.405 | 1.422 | 1.247 | 1.463 | 0.78 | 0.336 | 0.672 | 1.838 | 0.803 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6246
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.479
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
cytoplasm|extracellular
|
— | — | — | — | — | — |
1-19
|
0.727
|
0.998
|
0.000
|
0.000
|
0.168
|
0.366
|
0.026
|
0.533
|
0.228
|
0.059
|
0.059
|
0.305
|
0.142
|
0.664
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002001
|
3.000
|
1.000
|
Hsc_gene_7078.t1
|
Hsc_gene_5092.t1;Hsc_gene_7078.t1
|
— |
A6H730.1 Prostatic acid phosphatase [Bos taurus]
|
KAI1714975.1 histidine phosphatase superfamily (branch 2) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.757|GO:0110165_0.754|GO:0008150_0.740|GO:0009987_0.682|GO:0016020_0.657|GO:0005622_0.637|GO:0003674_0.597|GO:0043226_0.596|GO:0043229_0.585|GO:0043227_0.556|GO:0005737_0.524
|
IPR000560+21-143_21-290+|IPR029033+20-290+|IPR033379+22-36+|IPR050645+14-290+
|
— |
PF00328+21-290+Histidine_phosphatase_superfamily_(branch_2)
|
— |
PTHR11567+14-290+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-293
|
7d2f_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.791
|
34157.430
|
9.612
|
10.500
|
28.669
|
13.993
|
46.075
|
53.925
|
17.065
|
11.604
|
40.614
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
brown
|
49.577
|
11.505
|
33.626
|
70.168
|
49.194
|
204.941
|
94.313
|
114.656
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.319
|
2.469
|
1.167
|
-0.548
|
2.076
|
-1.111
|
-0.947
|
— | — |
6.990
|
— | — | — |