Hg_chrom3_TN10mRNA_6592
Organism: Heterodera glycines Gene Locus: chr3:11662437-11663031 Feature type: polypeptideProtein Sequence
Length: 125
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.93 | 0.93 | 1.018 | 1.103 | 2.0 | 0.821 | 0.667 | 1.6 | 0.889 | 1.189 | 1.091 | 2.353 | 1.333 | 0.462 | 1.143 | 0.686 | 0.525 | 0.727 | 1.231 | 1.176 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6247
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKLKKWR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.669
|
0.432
|
0.040
|
0.551
|
0.137
|
0.258
|
0.276
|
0.006
|
0.029
|
0.249
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001233
|
4.000
|
1.000
|
Hsc_gene_23657.t1
|
— | — |
C5J6A7.1 ATP-dependent zinc metalloprotease FtsH [Mesomycoplasma conjunctivae HRC/581]
|
MBR2677119.1 ATP-dependent zinc metalloprotease FtsH [Solobacterium sp.]
|
NLH63613
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004222|GO:0005524|GO:0006508
|
GO:0005575_0.901|GO:0110165_0.891|GO:0008150_0.845|GO:0005622_0.834|GO:0016020_0.779|GO:0005737_0.721|GO:0009987_0.712|GO:0043226_0.694|GO:0043229_0.678|GO:0065007_0.605|GO:0043227_0.603|GO:0043231_0.584|GO:0050789_0.515
|
IPR000642+30-121+|IPR037219+24-124_29-121+
|
— |
PF01434+30-121+Peptidase_family_M41
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-125
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.807
|
14512.470
|
5.021
|
-4.000
|
33.600
|
13.600
|
48.800
|
51.200
|
16.000
|
17.600
|
41.600
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
salmon
|
2.856
|
2.129
|
1.595
|
0.873
|
3.850
|
0.741
|
1.423
|
1.118
|
0.000
|
8.096
|
4.626
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
2.118
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.