Hg_chrom3_TN10mRNA_6594
Organism: Heterodera glycines Gene Locus: chr3:11673836-11676981 Feature type: polypeptideProtein Sequence
Length: 396
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.145 | 0.822 | 0.964 | 0.697 | 0.884 | 1.23 | 0.571 | 1.389 | 1.291 | 1.502 | 0.918 | 1.04 | 2.455 | 0.68 | 0.928 | 0.613 | 0.787 | 1.148 | 1.166 | 0.52 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6249
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
RRQCNRVTVAAKKVSR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.327
|
0.227
|
0.015
|
0.409
|
0.598
|
0.352
|
0.440
|
0.014
|
0.313
|
0.105
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000826
|
5.000
|
1.000
|
Hsc_gene_1980.t1
|
Hsc_gene_12114.t3;Hsc_gene_15389.t1
|
— |
Q5TZE1.1 BTB/POZ domain-containing protein 6-B [Danio rerio]
|
KAI3415282.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.847|GO:0110165_0.832|GO:0005622_0.704|GO:0008150_0.648|GO:0043226_0.621|GO:0016020_0.616|GO:0043229_0.601|GO:0005737_0.587|GO:0009987_0.545
|
IPR000210+21-98_21-124_21-129+|IPR011333+1-155_21-124+|IPR011705+132-243_138-238+
|
SM00225+21-129+|SM00875+132-243+
|
PF00651+21-124+BTB/POZ_domain|PF07707+138-238+BTB_And_C-terminal_Kelch
|
— |
PTHR45774+20-275+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-396
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.521
|
44901.170
|
7.444
|
5.500
|
23.990
|
14.899
|
41.414
|
58.586
|
13.384
|
10.606
|
45.707
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
155.673
|
518.943
|
249.549
|
73.409
|
45.199
|
50.071
|
56.153
|
105.443
|
29.629
|
246.809
|
153.732
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.288
|
-2.959
|
-1.655
|
-0.729
|
— | — |
0.971
|
-0.770
|
— | — | — | — | — |
No JSON data available for plots.