Hg_chrom3_TN10mRNA_6598
Organism: Heterodera glycines Gene Locus: chr3:11712768-11713341 Feature type: polypeptideProtein Sequence
Length: 94
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.742 | 0.742 | 0.58 | 0.734 | 0.709 | 0.818 | 0.76 | 2.128 | 0.709 | 2.156 | 1.451 | 0.626 | 1.478 | 0.614 | 1.086 | 0.912 | 0.872 | 1.451 | 0.0 | 0.626 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6253
|
— | — |
1.778
|
1.000
|
2.000
|
2.000
|
2.000
|
3.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.652
|
0.288
|
0.047
|
0.413
|
0.133
|
0.087
|
0.089
|
0.055
|
0.026
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003701
|
2.000
|
1.000
|
Hsc_gene_12452.t1
|
Hsc_gene_12452.t1
|
— | — |
KAF7637931.1 Sm domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723
|
GO:0003674_0.782|GO:0005488_0.772|GO:0005575_0.750|GO:0110165_0.746|GO:0008150_0.689|GO:0005622_0.667|GO:0097159_0.667|GO:0003676_0.664|GO:0003723_0.657|GO:0043226_0.646|GO:0016020_0.640|GO:0009987_0.638|GO:0043229_0.628|GO:0043227_0.592|GO:0043231_0.586
|
IPR001163+8-77_9-76+|IPR010920+8-83+|IPR047575+5-81+|IPR052840+5-90+
|
SM00651+8-77+
|
PF01423+9-76+LSM_domain
|
— |
PTHR21196+5-90+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-94
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.512
|
10506.410
|
10.417
|
9.000
|
26.596
|
11.702
|
44.681
|
55.319
|
19.149
|
7.447
|
45.745
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
80.762
|
31.490
|
28.103
|
25.670
|
32.978
|
29.072
|
28.809
|
19.001
|
6.911
|
274.982
|
160.094
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
-0.718
|
0.744
|
-5.474
|
— | — | — | — |
No JSON data available for plots.