Hg_chrom3_TN10mRNA_6600
Organism: Heterodera glycines Gene Locus: chr3:11736100-11737666 Feature type: polypeptideProtein Sequence
Length: 213
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.928 | 0.764 | 0.939 | 0.809 | 1.878 | 0.722 | 0.727 | 1.174 | 0.939 | 0.888 | 1.28 | 2.209 | 0.782 | 0.632 | 1.725 | 1.073 | 0.616 | 0.925 | 1.083 | 0.69 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6255
|
— | — |
0.667
|
— |
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
RKLAGVENNPNTRSARRKV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.554
|
0.365
|
0.058
|
0.324
|
0.152
|
0.072
|
0.137
|
0.205
|
0.212
|
0.354
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001233
|
4.000
|
1.000
|
Hsc_gene_23657.t1
|
— | — |
C5J6A7.1 ATP-dependent zinc metalloprotease FtsH [Mesomycoplasma conjunctivae HRC/581]
|
— |
MBR2677119
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004222|GO:0005524|GO:0006508
|
— |
IPR000642+16-92+|IPR037219+14-159_16-157+
|
— |
PF01434+16-92+Peptidase_family_M41
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
213-213
|
1.000
|
1-212
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.658
|
24300.610
|
7.690
|
3.500
|
35.681
|
8.920
|
53.052
|
46.948
|
19.249
|
16.432
|
45.540
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
red
|
99.996
|
4.047
|
37.826
|
8.713
|
3.114
|
6.414
|
1.718
|
30.007
|
1.028
|
402.272
|
230.310
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.989
|
— |
-2.004
|
-1.512
|
— | — |
2.123
|
-3.982
|
— | — | — | — | — |
No JSON data available for plots.