Hg_chrom3_TN10mRNA_6601
Organism: Heterodera glycines Gene Locus: chr3:11744943-11745955 Feature type: polypeptideProtein Sequence
Length: 112
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.311 | 1.453 | 1.299 | 1.232 | 1.19 | 0.687 | 0.638 | 1.339 | 1.389 | 1.086 | 1.218 | 1.576 | 1.984 | 0.172 | 0.729 | 1.658 | 0.732 | 0.406 | 2.06 | 1.313 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6256
|
— | — |
2.111
|
3.000
|
2.000
|
1.000
|
2.000
|
2.000
|
3.000
|
2.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.003
|
— | — |
0.381
|
0.287
|
0.008
|
0.501
|
0.221
|
0.114
|
0.081
|
0.010
|
0.469
|
0.270
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
KAI1694903.1 BTB/POZ domain-containing protein [Ditylenchus destructor]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.931|GO:0065007_0.856|GO:0009987_0.854|GO:0050789_0.834|GO:0003674_0.788|GO:0005575_0.725|GO:0110165_0.724|GO:0065008_0.691|GO:0031647_0.674|GO:0003824_0.668|GO:0016787_0.665|GO:0140096_0.662|GO:0008233_0.657|GO:0005622_0.652|GO:0004843_0.650|GO:0008234_0.650|GO:0019783_0.650|GO:0101005_0.650|GO:0016020_0.617|GO:0043226_0.611|GO:0005737_0.606|GO:0050794_0.592|GO:0043229_0.590|GO:0043227_0.576|GO:0043231_0.566|GO:0005488_0.542|GO:0005515_0.526|GO:0008152_0.523|GO:0043170_0.520|GO:0071840_0.513|GO:0016043_0.512|GO:0044238_0.512|GO:0009058_0.510|GO:0044237_0.506|GO:0009059_0.505|GO:0044249_0.505|GO:0010467_0.504
|
IPR002083+30-101+|IPR008974+6-109+
|
— |
PF22486+30-101+MATH_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-112
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.580
|
13100.730
|
5.636
|
-1.500
|
28.571
|
16.964
|
53.571
|
46.429
|
14.286
|
14.286
|
44.643
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
23.196
|
0.000
|
6.865
|
6.325
|
2.172
|
2.030
|
2.228
|
1.374
|
2.764
|
91.535
|
53.491
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7.117
|
7.088
|
— |
-1.560
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.