Hg_chrom3_TN10mRNA_6604
Organism: Heterodera glycines Gene Locus: chr3:11792073-11800896 Feature type: polypeptideProtein Sequence
Length: 746
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.387 | 0.998 | 1.121 | 0.601 | 0.827 | 1.272 | 0.638 | 1.408 | 0.864 | 1.232 | 0.65 | 1.183 | 1.005 | 1.186 | 1.04 | 1.417 | 1.055 | 0.65 | 0.722 | 0.591 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6259
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
11-34
|
0.941
|
— | — | — | — |
0.000
|
— | — |
0.236
|
0.171
|
0.022
|
0.699
|
0.247
|
0.421
|
0.433
|
0.068
|
0.175
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008191
|
1.000
|
1.000
|
Hsc_gene_11885.t1
|
Hsc_gene_15090.t2;Hsc_gene_15340.t1
|
— |
P97874.1 Cyclin-G-associated kinase [Rattus norvegicus]
|
KAI6181703.1 Cyclin-G-associated kinase [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.901|GO:0005575_0.837|GO:0110165_0.835|GO:0065007_0.779|GO:0009987_0.768|GO:0050789_0.768|GO:0005622_0.746|GO:0050794_0.634|GO:0016020_0.608|GO:0005737_0.593|GO:0003674_0.581|GO:0016043_0.548|GO:0071840_0.548|GO:0051179_0.515|GO:0051234_0.502
|
IPR000719+62-372_102-366+|IPR001623+698-736+|IPR008271+224-236+|IPR011009+53-368+|IPR036869+616-741_616-744+
|
SM00220+62-372+
|
PF00069+102-366+Protein_kinase_domain
|
G3DSA:1.10.287.110:FF:000002+616-744+putative_tyrosine-protein_phosphatase_auxilin_isoform_X2
|
PTHR22967+48-641+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
380-621
|
2.000
|
1-379;622-746
|
4o38_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.702
|
80952.770
|
6.311
|
-2.500
|
23.324
|
9.383
|
48.928
|
51.072
|
12.198
|
11.126
|
56.300
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
darkgrey
|
977.537
|
661.806
|
590.290
|
652.715
|
840.637
|
872.436
|
1346.067
|
449.267
|
484.916
|
1883.080
|
1283.867
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.395
|
-0.157
|
0.254
|
0.334
|
— |
0.636
|
-1.063
|
1.726
|
— | — | — | — | — |
No JSON data available for plots.