Hg_chrom3_TN10mRNA_6605
Organism: Heterodera glycines Gene Locus: chr3:11801790-11809742 Feature type: polypeptideProtein Sequence
Length: 925
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.069 | 0.478 | 0.708 | 0.857 | 1.171 | 1.275 | 0.734 | 1.568 | 1.201 | 1.373 | 0.557 | 1.463 | 0.991 | 0.977 | 1.258 | 1.421 | 0.868 | 0.901 | 1.081 | 0.572 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6260
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.726
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
golgi_apparatus
|
— |
RHRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.325
|
0.605
|
0.036
|
0.430
|
0.444
|
0.542
|
0.718
|
0.020
|
0.202
|
0.125
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008192
|
1.000
|
1.000
|
Hsc_gene_11886.t1
|
Hsc_gene_11886.t1
|
— |
Q5TGY1.1 Transmembrane and coiled-coil domain-containing protein 4 [Homo sapiens]
|
KAI1728627.1 putative membrane protein F35D11.3 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.938|GO:0110165_0.937|GO:0016020_0.876|GO:0008150_0.744|GO:0009987_0.704|GO:0003674_0.656|GO:0005622_0.636|GO:0051179_0.607|GO:0043226_0.604|GO:0006810_0.591|GO:0051234_0.591|GO:0043229_0.568|GO:0005737_0.553|GO:0043227_0.547|GO:0043231_0.528
|
IPR007941+152-693_356-692+|IPR029058+558-629+
|
— |
PF05277+356-692+Protein_of_unknown_function_(DUF726)
|
— |
PTHR17920+152-693+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-129;702-812
|
2.000
|
130-701;813-925
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.661
|
102028.520
|
6.754
|
4.500
|
23.892
|
10.054
|
46.162
|
53.838
|
12.973
|
10.919
|
50.054
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
greenyellow
|
932.430
|
515.766
|
567.080
|
573.649
|
440.694
|
764.260
|
889.497
|
558.401
|
252.095
|
2274.303
|
1407.643
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-0.413
|
0.809
|
0.230
|
-0.556
|
0.814
|
-3.280
|
— | — | — | — |
No JSON data available for plots.