Hg_chrom3_TN10mRNA_6606
Organism: Heterodera glycines Gene Locus: chr3:11809748-11816264 Feature type: polypeptideProtein Sequence
Length: 695
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.887 | 1.439 | 0.759 | 0.744 | 1.295 | 0.996 | 0.754 | 1.367 | 1.663 | 1.4 | 0.719 | 1.354 | 1.239 | 0.609 | 0.91 | 1.11 | 0.967 | 0.698 | 0.553 | 0.931 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6261
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-17
|
0.986
|
1.000
|
0.000
|
0.000
|
0.157
|
0.225
|
0.019
|
0.362
|
0.239
|
0.250
|
0.262
|
0.115
|
0.356
|
0.671
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008193
|
1.000
|
1.000
|
Hsc_gene_11887.t1
|
Hsc_gene_11887.t1
|
— |
Q29471.2 Annexin A13 [Canis lupus familiaris]
|
XP_974030.1 annexin B9 [Tribolium castaneum]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0005509|GO:0005544|GO:0006508
|
GO:0005575_0.884|GO:0110165_0.878|GO:0016020_0.768|GO:0008150_0.736|GO:0005622_0.701|GO:0071944_0.699|GO:0003674_0.698|GO:0009987_0.677|GO:0043226_0.676|GO:0043227_0.643|GO:0005886_0.632|GO:0005737_0.622|GO:0005488_0.587|GO:0043229_0.558|GO:0065007_0.551|GO:0050789_0.526|GO:0043231_0.515
|
IPR001254+45-307_46-397_48-97_156-300+|IPR001464+441-457_468-489_549-575_627-647+|IPR009003+5-301+|IPR018114+90-95+|IPR018252+476-528+|IPR018502+459-530_463-527_476-528+|IPR033116+270-281+|IPR037104+387-674_458-534_535-616_617-685+|IPR043504+41-323+
|
SM00020+45-307+|SM00335+476-528+
|
PF00089+48-97_156-300+Trypsin|PF00191+463-527+Annexin
|
G3DSA:1.10.220.10:FF:000003+459-534+Annexin
|
PTHR10502+430-684+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-695
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.551
|
77566.200
|
5.608
|
-9.500
|
23.885
|
11.079
|
47.626
|
52.374
|
11.942
|
11.942
|
47.914
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
841.508
|
69.365
|
50.758
|
118.991
|
275.654
|
462.702
|
245.030
|
220.424
|
134.546
|
3039.592
|
1794.572
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.681
|
0.642
|
1.339
|
1.181
|
0.762
|
-0.908
|
-1.178
|
— |
-4.565
|
— | — | — | — |