Hg_chrom3_TN10mRNA_6607
Organism: Heterodera glycines Gene Locus: chr3:11841739-11843609 Feature type: polypeptideProtein Sequence
Length: 205
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.681 | 1.815 | 1.242 | 2.019 | 0.976 | 0.876 | 0.465 | 1.951 | 0.759 | 1.055 | 1.404 | 3.443 | 1.22 | 0.657 | 0.996 | 0.767 | 0.56 | 0.739 | 0.375 | 1.004 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6262
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.572
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKALESKFVCKKCGK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.588
|
0.451
|
0.024
|
0.565
|
0.179
|
0.092
|
0.137
|
0.004
|
0.149
|
0.142
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003696
|
2.000
|
1.000
|
Hsc_gene_15105.t1
|
— | — | — |
KAI3413191.1 hypothetical protein GPALN_010692 [Globodera pallida]
|
WP_190393914
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.883|GO:0110165_0.883|GO:0003674_0.872|GO:0005622_0.827|GO:0005488_0.817|GO:0005515_0.779|GO:0043226_0.755|GO:0016020_0.753|GO:0005737_0.748|GO:0043229_0.727|GO:0043227_0.711|GO:0043231_0.698|GO:0030544_0.650|GO:0031072_0.650|GO:0051087_0.650|GO:0005634_0.643|GO:0005829_0.616|GO:0031974_0.598|GO:0043233_0.598|GO:0070013_0.596|GO:0031981_0.584|GO:0005654_0.573|GO:0045171_0.540
|
IPR001623+18-75_19-83_21-69_26-69+|IPR036869+4-72_16-70+
|
SM00271+18-75+
|
PF00226+21-69+DnaJ_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-205
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.730
|
23709.310
|
7.920
|
7.000
|
30.732
|
12.195
|
50.732
|
49.268
|
18.049
|
12.683
|
47.317
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
184.626
|
130.400
|
43.272
|
9.524
|
3.334
|
2.502
|
7.116
|
2.237
|
12.050
|
724.306
|
419.053
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.822
|
-3.914
|
-2.075
|
-1.552
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.