Hg_chrom3_TN10mRNA_6609
Organism: Heterodera glycines Gene Locus: chr3:11849540-11851743 Feature type: polypeptideProtein Sequence
Length: 494
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.824 | 1.601 | 0.957 | 0.698 | 1.248 | 0.779 | 0.627 | 0.304 | 1.574 | 1.204 | 1.104 | 1.429 | 1.856 | 0.467 | 1.198 | 1.012 | 0.763 | 0.797 | 1.401 | 0.834 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6264
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
RKSK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.562
|
0.273
|
0.029
|
0.487
|
0.095
|
0.179
|
0.085
|
0.074
|
0.185
|
0.152
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
— | — |
P58545.2 BTB/POZ domain-containing protein 3 [Mus musculus]
|
KAI3416310.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.737|GO:0110165_0.736|GO:0008150_0.684|GO:0005622_0.644|GO:0005737_0.573|GO:0009987_0.542
|
IPR002083+204-364_212-349+|IPR008974+194-376+|IPR011333+1-71+|IPR011705+49-159_52-156+
|
SM00875+49-159+
|
PF00917+212-349+MATH_domain|PF07707+52-156+BTB_And_C-terminal_Kelch
|
— |
PTHR45774+1-186+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-494
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.703
|
56593.820
|
7.732
|
3.500
|
26.518
|
11.943
|
48.178
|
51.822
|
13.765
|
12.753
|
45.951
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
922.766
|
20.947
|
36.511
|
145.731
|
90.513
|
22.265
|
38.201
|
20.239
|
46.923
|
3861.507
|
2226.685
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.568
|
2.661
|
2.110
|
-0.721
|
-2.007
|
0.786
|
— |
1.054
|
-6.477
|
— |
-5.011
|
— | — |
No JSON data available for plots.