Hg_chrom3_TN10mRNA_6615
Organism: Heterodera glycines Gene Locus: chr3:11877548-11880495 Feature type: polypeptideProtein Sequence
Length: 442
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.921 | 1.368 | 1.234 | 0.936 | 1.094 | 0.986 | 0.646 | 0.792 | 1.207 | 1.284 | 1.063 | 1.73 | 1.823 | 0.522 | 0.97 | 1.099 | 0.779 | 0.617 | 1.044 | 0.732 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6270
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.885
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRK,KRKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.851
|
0.130
|
0.003
|
0.246
|
0.052
|
0.043
|
0.046
|
0.014
|
0.091
|
0.099
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000084
|
11.000
|
5.000
|
Hsc_gene_16057.t1;Hsc_gene_17318.t1;Hsc_gene_17318.t2;Hsc_gene_18191.t1;Hsc_gene_26575.t1
|
Hsc_gene_20500.t1
|
— |
Q5TZE1.1 BTB/POZ domain-containing protein 6-B [Danio rerio]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.755|GO:0110165_0.748|GO:0008150_0.732|GO:0005622_0.706|GO:0005737_0.637|GO:0009987_0.597|GO:0043226_0.572|GO:0043229_0.553|GO:0003674_0.531
|
IPR000210+14-126_23-100_23-131+|IPR002083+294-424_297-416_299-405+|IPR008974+288-435+|IPR011333+1-157_3-126+|IPR011705+135-245_141-242+
|
SM00061+299-405+|SM00225+23-131+|SM00875+135-245+
|
PF00651+14-126+BTB/POZ_domain|PF07707+141-242+BTB_And_C-terminal_Kelch|PF22486+297-416+MATH_domain
|
— |
PTHR45774+8-316+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
442-442
|
1.000
|
1-441
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.569
|
50055.950
|
5.742
|
-3.500
|
26.697
|
11.991
|
48.869
|
51.131
|
13.348
|
13.348
|
47.964
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
12.227
|
7.094
|
6.809
|
11.779
|
15.072
|
9.344
|
33.645
|
18.936
|
1.587
|
13.800
|
8.566
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.904
|
— | — |
1.855
|
— |
0.969
|
— | — | — | — | — |
No JSON data available for plots.