Hg_chrom3_TN10mRNA_6617
Organism: Heterodera glycines Gene Locus: chr3:11906123-11909748 Feature type: polypeptideProtein Sequence
Length: 396
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.116 | 0.822 | 1.01 | 0.784 | 0.884 | 1.23 | 0.541 | 1.389 | 1.291 | 1.502 | 0.918 | 1.04 | 2.455 | 0.68 | 0.928 | 0.613 | 0.787 | 1.186 | 0.971 | 0.52 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6272
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
RRQCNRVTVAAKKVSR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.351
|
0.219
|
0.018
|
0.424
|
0.591
|
0.311
|
0.437
|
0.015
|
0.313
|
0.106
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000826
|
5.000
|
1.000
|
Hsc_gene_1980.t1
|
Hsc_gene_12114.t1;Hsc_gene_12114.t2;Hsc_gene_12114.t3
|
— |
Q5TZE1.1 BTB/POZ domain-containing protein 6-B [Danio rerio]
|
KAI3415282.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.848|GO:0110165_0.833|GO:0005622_0.709|GO:0008150_0.656|GO:0043226_0.622|GO:0016020_0.618|GO:0043229_0.602|GO:0005737_0.592|GO:0009987_0.553
|
IPR000210+21-98_21-124_21-129+|IPR011333+1-155_21-124+|IPR011705+132-243_138-238+
|
SM00225+21-129+|SM00875+132-243+
|
PF00651+21-124+BTB/POZ_domain|PF07707+138-238+BTB_And_C-terminal_Kelch
|
— |
PTHR45774+20-275+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-396
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.551
|
44904.190
|
7.216
|
4.500
|
24.242
|
14.646
|
41.667
|
58.333
|
13.384
|
10.859
|
45.960
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
73.573
|
333.079
|
90.165
|
33.328
|
23.951
|
27.778
|
37.704
|
52.422
|
5.494
|
93.352
|
55.698
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.118
|
-3.460
|
-1.326
|
— | — | — |
0.810
|
— |
-4.187
|
— | — | — | — |
No JSON data available for plots.