Hg_chrom3_TN10mRNA_6621
Organism: Heterodera glycines Gene Locus: chr3:11931975-11933974 Feature type: polypeptideProtein Sequence
Length: 200
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.581 | 0.698 | 0.818 | 0.862 | 0.75 | 0.641 | 0.595 | 1.25 | 1.556 | 1.959 | 0.379 | 1.471 | 1.389 | 0.962 | 1.939 | 1.5 | 0.82 | 0.758 | 1.538 | 0.588 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6275
|
— | — |
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.971
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.336
|
0.512
|
0.035
|
0.489
|
0.302
|
0.102
|
0.149
|
0.359
|
0.135
|
0.277
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002002
|
4.000
|
0.000
|
0.000
|
Hsc_gene_11886.t1
|
— |
Q20035.2 Uncharacterized membrane protein F35D11.3 [Caenorhabditis elegans]
|
KAI1728627.1 putative membrane protein F35D11.3 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.893|GO:0110165_0.892|GO:0016020_0.829|GO:0005622_0.807|GO:0005737_0.760|GO:0043226_0.754|GO:0043229_0.748|GO:0043227_0.738|GO:0043231_0.738|GO:0005886_0.726|GO:0071944_0.726|GO:0005773_0.640|GO:0012505_0.635|GO:0005794_0.563
|
IPR007941+55-140_56-140+
|
— |
PF05277+55-140+Protein_of_unknown_function_(DUF726)
|
— |
PTHR17920+56-140+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-200
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.878
|
22825.590
|
9.298
|
8.500
|
23.500
|
11.500
|
44.500
|
55.500
|
14.500
|
9.000
|
45.500
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
35.451
|
3.211
|
19.417
|
12.449
|
7.431
|
19.782
|
48.328
|
10.320
|
0.000
|
109.748
|
62.713
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.366
|
1.817
|
— | — |
1.421
|
1.295
|
-1.046
|
2.367
|
-7.580
|
4.495
|
— | — | — |
No JSON data available for plots.