Hg_chrom3_TN10mRNA_6625
Organism: Heterodera glycines Gene Locus: chr3:11964196-11971577 Feature type: polypeptideProtein Sequence
Length: 445
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.888 | 0.679 | 0.981 | 0.465 | 0.824 | 1.613 | 0.722 | 1.011 | 0.899 | 1.063 | 0.647 | 1.851 | 1.373 | 1.21 | 1.605 | 1.188 | 1.142 | 0.885 | 1.21 | 0.661 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6279
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — |
27-47
|
1.000
|
— | — |
0.000
|
— | — |
0.083
|
0.931
|
0.102
|
0.152
|
0.193
|
0.050
|
0.186
|
0.044
|
0.052
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003703
|
2.000
|
1.000
|
Hsc_gene_12119.t1
|
Hsc_gene_9497.t1;Hsc_gene_9499.t1;Hsc_gene_9499.t2
|
— |
Q22647.1 Mitochondrial import inner membrane translocase subunit TIM50 [Caenorhabditis elegans]
|
KAF7639395.1 Mitochondrial import inner membrane translocase subunit TIM50 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.812|GO:0005575_0.779|GO:0110165_0.775|GO:0009987_0.698|GO:0016020_0.689|GO:0005622_0.612|GO:0043226_0.585|GO:0043229_0.554|GO:0065007_0.533|GO:0043227_0.521|GO:0003674_0.512
|
IPR004274+231-378_234-366_237-387+|IPR023214+219-409+|IPR036412+225-390+|IPR050365+131-393+
|
SM00577+234-366+
|
PF03031+237-387+NLI_interacting_factor-like_phosphatase
|
G3DSA:3.40.50.1000:FF:000019+220-408+Mitochondrial_import_inner_membrane_translocase_subunit_TIM50
|
PTHR12210+131-393+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
37-155
|
2.000
|
1-36;156-445
|
4yh1_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.831
|
50063.890
|
9.279
|
12.500
|
24.494
|
10.787
|
48.989
|
51.011
|
14.157
|
10.337
|
50.787
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
steelblue
|
375.269
|
427.416
|
336.558
|
495.178
|
596.623
|
432.983
|
772.263
|
373.246
|
116.873
|
266.295
|
202.257
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.576
|
— |
0.667
|
0.237
|
-0.448
|
0.846
|
-0.319
|
1.192
|
— | — |
2.705
|
— | — |
No JSON data available for plots.