Hg_chrom3_TN10mRNA_6629
Organism: Heterodera glycines Gene Locus: chr3:11980639-11982675 Feature type: polypeptideProtein Sequence
Length: 453
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.027 | 1.078 | 1.124 | 0.837 | 1.361 | 0.849 | 0.473 | 0.552 | 1.521 | 1.313 | 1.338 | 1.299 | 1.533 | 0.594 | 0.721 | 1.135 | 0.507 | 0.87 | 0.849 | 1.104 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6282
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.637
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.520
|
0.151
|
0.011
|
0.685
|
0.265
|
0.181
|
0.170
|
0.032
|
0.105
|
0.179
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
— | — |
Q5TZE1.1 BTB/POZ domain-containing protein 6-B [Danio rerio]
|
KAI3416310.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.780|GO:0110165_0.779|GO:0005622_0.671|GO:0008150_0.656|GO:0005737_0.561|GO:0043226_0.557|GO:0043229_0.529
|
IPR000210+16-110_19-119_26-88+|IPR002083+279-412_283-401_284-393+|IPR008974+274-420+|IPR011333+1-145_3-109+|IPR011705+123-233_127-197+
|
SM00061+284-393+|SM00225+19-119+|SM00875+123-233+
|
PF00651+16-110+BTB/POZ_domain|PF07707+127-197+BTB_And_C-terminal_Kelch|PF22486+283-401+MATH_domain
|
G3DSA:1.25.40.420:FF:000008+145-252+BTB/POZ_domain-containing_protein_POB1
|
PTHR45774+11-256+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-453
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.535
|
51322.910
|
5.183
|
-6.500
|
27.815
|
11.479
|
46.799
|
53.201
|
13.466
|
14.349
|
45.916
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
brown
|
14.222
|
15.940
|
29.016
|
12.436
|
31.193
|
31.155
|
24.743
|
19.937
|
0.000
|
0.564
|
0.322
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.632
|
— |
-1.111
|
1.295
|
— | — |
-0.751
|
— | — |
4.494
|
— | — | — |
No JSON data available for plots.