Hg_chrom3_TN10mRNA_6636
Organism: Heterodera glycines Gene Locus: chr3:12007668-12008778 Feature type: polypeptideProtein Sequence
Length: 87
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.871 | 1.069 | 1.045 | 0.396 | 0.766 | 1.179 | 0.411 | 0.575 | 1.533 | 0.932 | 0.697 | 1.352 | 2.235 | 0.663 | 1.173 | 0.985 | 0.754 | 1.219 | 0.0 | 0.338 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6288
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.404
|
0.292
|
0.219
|
0.498
|
0.136
|
0.085
|
0.082
|
0.075
|
0.115
|
0.787
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003705
|
2.000
|
1.000
|
Hsc_gene_12125.t1
|
Hsc_gene_12125.t1
|
— |
Q60854.1 Serpin B6 [Mus musculus]
|
CAH1272144.1 SERPINB9 [Branchiostoma lanceolatum]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867|GO:0005615
|
GO:0005575_0.791|GO:0110165_0.782|GO:0008150_0.747|GO:0016020_0.562|GO:0005622_0.550|GO:0003674_0.547|GO:0065007_0.536|GO:0005488_0.520
|
IPR000215+1-82+|IPR023796+1-82+|IPR036186+1-85+|IPR042178+1-54+|IPR042185+33-83+
|
— |
PF00079+1-82+Serpin_(serine_protease_inhibitor)
|
— |
PTHR11461+1-82+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-87
|
2h4r_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.558
|
9504.910
|
6.976
|
0.500
|
21.839
|
10.345
|
42.529
|
57.471
|
11.494
|
10.345
|
54.023
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
96.688
|
2.978
|
7.487
|
5.307
|
19.029
|
15.583
|
20.089
|
12.556
|
0.000
|
391.873
|
223.927
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.812
|
— | — | — |
0.824
|
— | — | — | — | — |
No JSON data available for plots.