Hg_chrom3_TN10mRNA_6637
Organism: Heterodera glycines Gene Locus: chr3:12016788-12018461 Feature type: polypeptideProtein Sequence
Length: 186
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.188 | 0.375 | 1.662 | 0.742 | 0.986 | 1.792 | 0.576 | 1.882 | 0.717 | 0.654 | 1.222 | 1.898 | 1.344 | 0.931 | 1.426 | 1.152 | 0.353 | 0.733 | 0.414 | 1.107 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6289
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.704
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKMDYQMEHYVWKRRSD,KKERGVDMHASIKRRKDY
|
— | — | — | — | — | — |
0.000
|
— | — |
0.893
|
0.066
|
0.009
|
0.281
|
0.060
|
0.032
|
0.120
|
0.020
|
0.022
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000837
|
5.000
|
1.000
|
Hsc_gene_12131.t1
|
Hsc_gene_12127.t1;Hsc_gene_12131.t1;Hsc_gene_15091.t4
|
— |
A8Q2H5.2 Small ribosomal subunit protein uS2 [Brugia malayi]
|
KAI1697540.1 HCNGP-like protein domain-containing protein [Ditylenchus destructor];KAI1720504.1 HCNGP-like protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006355|GO:0006412
|
GO:0005575_0.884|GO:0110165_0.879|GO:0005622_0.802|GO:0043226_0.693|GO:0043229_0.682|GO:0008150_0.677|GO:0016020_0.636|GO:0005737_0.618|GO:0043227_0.544|GO:0043231_0.516|GO:0003674_0.508|GO:0043228_0.502|GO:0043232_0.502
|
IPR012479+52-173_63-155+|IPR018130+15-26+
|
— |
PF07818+63-155+HCNGP-like_protein
|
— |
PTHR13464+52-173+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
144-186
|
1.000
|
1-143
|
4ujc_CA
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.595
|
21206.780
|
7.413
|
3.500
|
33.871
|
12.903
|
52.688
|
47.312
|
18.817
|
15.054
|
47.849
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
turquoise
|
335.034
|
333.012
|
457.887
|
505.024
|
541.374
|
423.328
|
396.187
|
498.298
|
117.847
|
194.224
|
161.491
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.229
|
0.464
|
0.251
|
— |
-0.340
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.