Hg_chrom3_TN10mRNA_6639
Organism: Heterodera glycines Gene Locus: chr3:12022417-12023500 Feature type: polypeptideProtein Sequence
Length: 92
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.379 | 0.506 | 0.0 | 1.499 | 0.181 | 0.557 | 1.294 | 3.261 | 0.483 | 0.441 | 1.647 | 1.279 | 1.208 | 0.418 | 3.549 | 1.242 | 1.782 | 0.659 | 0.836 | 0.639 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6291
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRHNKTHTLCRRCGR,KRKRTFQWSVKSIRRRTT,KSIRRRTTGTGRMRHLKLVHRRFRNGFREGVTAPRKGGVK
|
10-30
|
0.935
|
— | — | — | — |
0.000
|
— | — |
0.628
|
0.220
|
0.104
|
0.553
|
0.386
|
0.081
|
0.173
|
0.003
|
0.089
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008195
|
1.000
|
1.000
|
Hsc_gene_12126.t1
|
Hsc_gene_12126.t1
|
— |
Q9VXX8.1 Large ribosomal subunit protein eL37A [Drosophila melanogaster]
|
KAF7638340.1 Ribosomal protein L37 [Meloidogyne graminicola]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.917|GO:0110165_0.899|GO:0005622_0.828|GO:0003674_0.723|GO:0043226_0.720|GO:0043229_0.718|GO:0005737_0.632|GO:0005840_0.609|GO:0043228_0.609|GO:0043232_0.609|GO:0005829_0.574|GO:0022626_0.574
|
IPR001569+2-53+|IPR011331+1-87+|IPR011332+1-55+|IPR018267+4-23+
|
— |
PF01907+2-53+Ribosomal_protein_L37e
|
G3DSA:2.20.25.30:FF:000001+1-87+Ribosomal_protein_L37
|
PTHR10768+1-85+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-92
|
0.000
|
— |
4v6w_Cj
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.873
|
10659.390
|
12.521
|
28.000
|
35.870
|
14.130
|
59.783
|
40.217
|
34.783
|
1.087
|
46.739
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.