Hg_chrom3_TN10mRNA_6640
Organism: Heterodera glycines Gene Locus: chr3:12028885-12034203 Feature type: polypeptideProtein Sequence
Length: 356
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.078 | 0.457 | 1.89 | 0.484 | 1.451 | 1.801 | 0.936 | 1.404 | 0.312 | 0.873 | 0.766 | 1.983 | 1.014 | 0.972 | 1.433 | 1.404 | 0.322 | 0.553 | 0.216 | 0.826 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6292
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRDHQAVLEQRRKKMM,KKMDYQMEHYVWKRRSD,KKERGVDMHASIKRRKDY
|
— | — | — | — | — | — |
0.000
|
— | — |
0.819
|
0.046
|
0.018
|
0.464
|
0.129
|
0.039
|
0.117
|
0.005
|
0.027
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000837
|
5.000
|
1.000
|
Hsc_gene_12131.t1
|
Hsc_gene_12127.t1;Hsc_gene_15091.t2;Hsc_gene_15091.t3;Hsc_gene_15091.t4
|
— |
A8Q2H5.2 Small ribosomal subunit protein uS2 [Brugia malayi]
|
KAI1697540.1 HCNGP-like protein domain-containing protein [Ditylenchus destructor];KAI1720504.1 HCNGP-like protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006355
|
GO:0005575_0.899|GO:0110165_0.895|GO:0005622_0.794|GO:0043226_0.676|GO:0043229_0.661|GO:0008150_0.657|GO:0016020_0.621|GO:0005737_0.592|GO:0003674_0.520|GO:0009987_0.517|GO:0043228_0.512|GO:0043232_0.512|GO:0043227_0.502|GO:0005829_0.501
|
IPR012479+4-247_165-247+
|
— |
PF07818+165-247+HCNGP-like_protein
|
— |
PTHR13464+4-247+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-182;295-356
|
1.000
|
183-294
|
4v6w_AA
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.701
|
39589.190
|
4.545
|
-20.000
|
33.989
|
9.551
|
54.775
|
45.225
|
14.888
|
19.101
|
51.404
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
230.595
|
420.186
|
295.030
|
269.782
|
251.400
|
199.639
|
129.885
|
198.825
|
83.747
|
284.264
|
198.328
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.740
|
-0.776
|
— | — |
-0.318
|
-0.611
|
— |
-0.473
|
— | — | — | — | — |
No JSON data available for plots.