SCN Proteipedia

Hg_chrom3_TN10mRNA_6646

Organism: Heterodera glycines Gene Locus: chr3:12065003-12071018 Feature type: polypeptide

Protein Sequence

Length: 421

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.69	0.994	1.425	0.328	2.177	1.279	1.046	1.306	0.686	0.706	1.08	0.838	0.726	0.822	1.503	1.018	0.818	0.9	0.731	0.419	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_6298	—	—	2.000	2.000	2.000	1.000	2.000	2.000	2.000	2.000	2.000	3.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRKR,KKKKK,RKRKH,KKRGKP	—	—	—	—	—	—	0.000	—	—	0.953	0.061	0.021	0.188	0.042	0.018	0.027	0.017	0.036	0.042

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003707	2.000	1.000	Hsc_gene_12137.t1	—	—	P34656.1 Uncharacterized protein ZK632.11 [Caenorhabditis elegans]	KAI1710594.1 PSP domain-containing protein [Ditylenchus destructor]	No	-0.240

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.935\|GO:0005575_0.928\|GO:0110165_0.928\|GO:0005622_0.888\|GO:0009987_0.885\|GO:0003674_0.849\|GO:0043226_0.844\|GO:0016020_0.836\|GO:0005488_0.831\|GO:0043229_0.822\|GO:0008152_0.790\|GO:0043170_0.779\|GO:0044238_0.778\|GO:0009058_0.774\|GO:0044237_0.773\|GO:0043227_0.769\|GO:0009059_0.764\|GO:0010467_0.764\|GO:0044249_0.764\|GO:0006139_0.761\|GO:0043231_0.754\|GO:0034654_0.747\|GO:0090304_0.742\|GO:0016070_0.739\|GO:0141187_0.739\|GO:0032774_0.733\|GO:0097159_0.731\|GO:0003676_0.718\|GO:0003723_0.710\|GO:0005634_0.709\|GO:0006396_0.693\|GO:0016071_0.689\|GO:0032991_0.689\|GO:0006397_0.685\|GO:0000375_0.682\|GO:0000377_0.682\|GO:0000398_0.682\|GO:0008380_0.682\|GO:0031123_0.670\|GO:0031124_0.670\|GO:0031974_0.648\|GO:0043233_0.648\|GO:0031981_0.647\|GO:0070013_0.647\|GO:0005654_0.607\|GO:0140513_0.582\|GO:1902494_0.572\|GO:1990904_0.566\|GO:0016604_0.550\|GO:0030532_0.549\|GO:0120114_0.549\|GO:0097525_0.547\|GO:0005681_0.545\|GO:0005682_0.545\|GO:0000974_0.540\|GO:0031499_0.540\|GO:0071013_0.540	IPR006568+141-202_149-190+\|IPR052115+123-374+	SM00581+141-202+	PF04046+149-190+PSP	—	PTHR13316+123-374+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	full	1-421	0.000	—	5lxy_N	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.671	47210.490	4.682	-21.500	38.005	7.601	59.382	40.618	17.102	20.903	50.119

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	violet	417.446	520.705	362.968	302.683	356.091	326.903	299.571	156.969	876.094	297.045	545.209

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.749	-0.919	—	0.203	—	—	-1.163	1.074	—	—	—	—	—

No JSON data available for plots.

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