Hg_chrom3_TN10mRNA_6648
Organism: Heterodera glycines Gene Locus: chr3:12079851-12081617 Feature type: polypeptideProtein Sequence
Length: 161
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.939 | 0.722 | 1.129 | 0.428 | 1.242 | 0.319 | 0.887 | 1.242 | 1.38 | 1.427 | 1.506 | 1.096 | 1.38 | 1.314 | 0.887 | 0.532 | 0.713 | 0.471 | 2.867 | 0.913 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6300
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.485
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.517
|
0.223
|
0.058
|
0.637
|
0.229
|
0.179
|
0.322
|
0.165
|
0.146
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003706
|
2.000
|
1.000
|
Hsc_gene_12136.t1
|
Hsc_gene_12136.t1
|
— |
A8Q8J2.1 Ubiquitin-fold modifier-conjugating enzyme 1 [Brugia malayi]
|
KAH7727668.1 Ubiquitin-fold modifier-conjugating enzyme 1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0061657|GO:0071569
|
GO:0003674_0.862|GO:0005575_0.705|GO:0110165_0.695|GO:0008150_0.687|GO:0009987_0.614|GO:0043226_0.590|GO:0008152_0.573|GO:0003824_0.551|GO:0044237_0.549|GO:0044238_0.542|GO:0043170_0.501
|
IPR014806+1-161_2-159_6-158+|IPR016135+1-161_2-158+
|
— |
PF08694+6-158+Ubiquitin-fold_modifier-conjugating_enzyme_1
|
— |
PTHR12921+2-159+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-161
|
7nvk_AAA
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.699
|
18406.260
|
7.893
|
3.000
|
30.435
|
14.286
|
42.857
|
57.143
|
16.770
|
13.665
|
44.099
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
596.725
|
281.810
|
312.493
|
373.042
|
437.589
|
442.625
|
364.904
|
384.175
|
942.056
|
930.392
|
935.391
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.267
|
0.363
|
0.198
|
— |
-0.268
|
-0.309
|
— | — | — | — | — | — |
No JSON data available for plots.