Hg_chrom3_TN10mRNA_6649
Organism: Heterodera glycines Gene Locus: chr3:12084214-12087060 Feature type: polypeptideProtein Sequence
Length: 287
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.215 | 0.486 | 1.837 | 0.481 | 1.568 | 1.966 | 1.037 | 1.22 | 0.31 | 0.8 | 0.686 | 1.435 | 0.968 | 1.273 | 1.422 | 1.344 | 0.228 | 0.475 | 0.0 | 0.717 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6301
|
— | — |
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKERGVDMHASIKRRKDY
|
— | — | — | — | — | — |
0.000
|
— | — |
0.885
|
0.050
|
0.008
|
0.418
|
0.081
|
0.043
|
0.127
|
0.006
|
0.015
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000837
|
5.000
|
1.000
|
Hsc_gene_12131.t1
|
— | — | — |
KAI1697540.1 HCNGP-like protein domain-containing protein [Ditylenchus destructor];KAI1720504.1 HCNGP-like protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.310
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006355
|
GO:0008150_0.943|GO:0005575_0.898|GO:0110165_0.890|GO:0005622_0.844|GO:0050896_0.798|GO:0016020_0.795|GO:0043226_0.787|GO:0043229_0.777|GO:0043227_0.733|GO:0043231_0.711|GO:0005634_0.706|GO:0044419_0.693|GO:0009605_0.690|GO:0009607_0.689|GO:0043207_0.689|GO:0051707_0.689|GO:0043228_0.686|GO:0043232_0.686|GO:0044403_0.675|GO:0009615_0.674|GO:0051702_0.670|GO:0051851_0.670|GO:0052472_0.670|GO:0031974_0.634|GO:0031981_0.634|GO:0043233_0.634|GO:0070013_0.634|GO:0005654_0.606|GO:0005856_0.576|GO:0045111_0.540
|
IPR012479+4-274_164-256+
|
— |
PF07818+164-256+HCNGP-like_protein
|
— |
PTHR13464+4-274+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-188;245-287
|
1.000
|
189-244
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.695
|
31468.060
|
4.402
|
-19.500
|
33.449
|
8.362
|
54.007
|
45.993
|
13.937
|
19.512
|
53.310
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkorange
|
547.971
|
357.156
|
256.354
|
220.574
|
220.700
|
191.788
|
169.663
|
194.099
|
284.843
|
1579.868
|
1024.857
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.706
|
-0.832
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.