Hg_chrom3_TN10mRNA_6651
Organism: Heterodera glycines Gene Locus: chr3:12095807-12099406 Feature type: polypeptideProtein Sequence
Length: 358
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.682 | 1.169 | 0.711 | 1.06 | 1.071 | 1.361 | 0.665 | 1.816 | 0.993 | 0.981 | 0.931 | 1.314 | 1.629 | 0.967 | 1.482 | 0.958 | 0.687 | 0.889 | 1.074 | 1.397 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6303
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.297
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RHRR
|
1-21
|
0.999
|
— | — |
1-22
|
— |
0.946
|
— |
0.000
|
0.226
|
0.261
|
0.019
|
0.341
|
0.184
|
0.071
|
0.093
|
0.006
|
0.117
|
0.787
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000838
|
2.000
|
4.000
|
Hsc_gene_12138.t1;Hsc_gene_2096.t1;Hsc_gene_23287.t1;Hsc_gene_25577.t1
|
— | — |
G5EE06.1 Alpha-(1,3)-fucosyltransferase fut-5 [Caenorhabditis elegans]
|
KAF7636818.1 Glyco_tran_10_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0008417|GO:0016020
|
GO:0008150_0.887|GO:0003674_0.831|GO:0003824_0.730|GO:0008152_0.683|GO:0016740_0.657|GO:0005575_0.654|GO:0110165_0.654|GO:0016757_0.606|GO:0016758_0.606|GO:0009987_0.601|GO:0008417_0.598|GO:0005622_0.569|GO:0070085_0.534|GO:0016020_0.527|GO:0043226_0.522|GO:0044238_0.516|GO:0005737_0.506|GO:0043229_0.501
|
IPR001503+103-158_189-328+|IPR031481+97-155+|IPR038577+181-308+
|
— |
PF00852+189-328+Glycosyltransferase_family_10_(fucosyltransferase)_C-term|PF17039+97-155+Fucosyltransferase,_N-terminal
|
— |
PTHR48350+103-158+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-358
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.852
|
41553.360
|
9.014
|
17.500
|
27.374
|
15.642
|
48.603
|
51.397
|
17.039
|
10.335
|
45.251
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
tan
|
56.662
|
43.470
|
77.660
|
42.836
|
38.382
|
45.194
|
41.920
|
69.918
|
146.420
|
3.312
|
64.644
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.611
|
— |
-0.752
|
— | — | — | — | — |
4.822
|
— | — | — | — |