Hg_chrom3_TN10mRNA_6654
Organism: Heterodera glycines Gene Locus: chr3:12109004-12110029 Feature type: polypeptideProtein Sequence
Length: 221
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.631 | 1.578 | 0.658 | 0.156 | 1.433 | 1.276 | 0.539 | 1.584 | 1.106 | 1.101 | 1.44 | 1.863 | 1.634 | 0.696 | 1.293 | 1.487 | 0.668 | 0.617 | 0.696 | 0.399 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6306
|
— | — |
1.667
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
3.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRK,KRKH,RKRR,SSRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.899
|
0.118
|
0.011
|
0.272
|
0.066
|
0.010
|
0.046
|
0.008
|
0.061
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003708
|
2.000
|
1.000
|
Hsc_gene_3016.t1
|
— | — |
O75132.2 Zinc finger BED domain-containing protein 4 [Homo sapiens]
|
KAI1707030.1 zinc finger BED domain-containing protein 4 [Ditylenchus destructor]
|
No
|
-0.660
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.925|GO:0110165_0.924|GO:0005622_0.903|GO:0043226_0.872|GO:0043229_0.862|GO:0016020_0.837|GO:0043227_0.816|GO:0043231_0.799|GO:0005737_0.794|GO:0003674_0.793|GO:0005488_0.790|GO:0005515_0.748|GO:0005634_0.736|GO:0042802_0.664|GO:0031974_0.602|GO:0031981_0.602|GO:0043233_0.602|GO:0070013_0.602|GO:0005654_0.573
|
IPR052035+17-199+
|
— | — | — |
PTHR46481+17-199+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-78
|
1.000
|
79-221
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.891
|
25434.880
|
10.207
|
11.500
|
31.222
|
11.312
|
57.466
|
42.534
|
19.005
|
12.217
|
42.986
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
27.421
|
3.088
|
8.497
|
3.409
|
3.745
|
3.749
|
1.005
|
1.777
|
33.239
|
85.560
|
63.137
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.231
|
— |
-1.212
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.