Hg_chrom3_TN10mRNA_6669
Organism: Heterodera glycines Gene Locus: chr3:12211222-12221188 Feature type: polypeptideProtein Sequence
Length: 971
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.653 | 0.862 | 1.18 | 1.207 | 0.875 | 1.32 | 0.821 | 2.06 | 0.435 | 0.946 | 0.609 | 0.909 | 0.687 | 1.188 | 1.303 | 1.192 | 0.794 | 0.952 | 0.475 | 0.303 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6317
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRQK,RRVSVALDARQARKRVA,HHRKKVAAPKRKRPSKS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.950
|
0.060
|
0.019
|
0.165
|
0.037
|
0.047
|
0.030
|
0.008
|
0.049
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001236
|
2.000
|
3.000
|
Hsc_gene_14693.t1;Hsc_gene_14693.t2;Hsc_gene_14693.t3
|
— | — |
A0A286Y9D1.1 PHD finger protein 14 [Danio rerio]
|
KAI1723773.1 PHD-zinc-finger like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.846|GO:0005575_0.805|GO:0110165_0.803|GO:0009987_0.788|GO:0003674_0.726|GO:0005622_0.694|GO:0005488_0.632|GO:0065007_0.631|GO:0043226_0.625|GO:0050789_0.615|GO:0043229_0.606|GO:0050794_0.571|GO:0005515_0.561|GO:0016020_0.560
|
IPR001965+142-293_363-446_847-897+|IPR011011+134-176_842-898+|IPR013083+296-446+|IPR034732+299-446+|IPR050701+62-917+
|
SM00249+142-293_363-446_847-897+
|
PF13832+301-413+PHD-zinc-finger_like_domain
|
— |
PTHR13793+62-917+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-139;182-229;702-850;900-971
|
3.000
|
140-181;230-701;851-899
|
7d87_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.707
|
103447.290
|
6.787
|
7.000
|
26.262
|
8.239
|
48.301
|
51.699
|
14.521
|
11.740
|
60.453
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
magenta
|
376.617
|
1073.432
|
418.246
|
427.389
|
494.715
|
458.662
|
441.421
|
219.391
|
131.997
|
223.733
|
184.417
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.589
|
-1.466
|
— |
0.180
|
— | — |
-1.167
|
1.150
|
— | — | — | — | — |
No JSON data available for plots.