Hg_chrom3_TN10mRNA_6672
Organism: Heterodera glycines Gene Locus: chr3:12230920-12233757 Feature type: polypeptideProtein Sequence
Length: 311
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.72 | 1.271 | 1.052 | 1.663 | 0.536 | 0.577 | 0.651 | 3.055 | 0.643 | 0.912 | 0.926 | 1.324 | 0.536 | 1.422 | 1.05 | 1.011 | 1.002 | 0.828 | 0.0 | 0.284 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6320
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
HHRKKVAAPKRKRPSKS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.966
|
0.036
|
0.079
|
0.181
|
0.027
|
0.031
|
0.031
|
0.007
|
0.068
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001236
|
2.000
|
3.000
|
Hsc_gene_14693.t1;Hsc_gene_14693.t2;Hsc_gene_14693.t3
|
— | — |
A0A286Y9D1.1 PHD finger protein 14 [Danio rerio]
|
KAI1714222.1 PHD-zinc-finger like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.865|GO:0110165_0.862|GO:0008150_0.773|GO:0005622_0.753|GO:0003674_0.733|GO:0009987_0.694|GO:0005488_0.657|GO:0043226_0.638|GO:0043229_0.628|GO:0016020_0.590|GO:0065007_0.585|GO:0050789_0.574|GO:0050794_0.560|GO:0005515_0.539|GO:0043227_0.532|GO:0043231_0.521
|
IPR001965+214-264+|IPR011011+209-265+|IPR019787+215-263+
|
SM00249+214-264+
|
PF00628+215-263+PHD-finger
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-21;95-164
|
2.000
|
22-94;165-311
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.887
|
32985.400
|
8.355
|
16.500
|
26.367
|
9.003
|
47.267
|
52.733
|
17.363
|
9.003
|
62.379
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
brown
|
65.011
|
151.581
|
53.128
|
48.996
|
52.118
|
47.738
|
113.489
|
49.635
|
16.836
|
78.038
|
51.808
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.745
|
-1.767
|
— | — | — |
1.261
|
— |
1.337
|
— | — | — | — | — |
No JSON data available for plots.