Hg_chrom3_TN10mRNA_6680
Organism: Heterodera glycines Gene Locus: chr3:12258408-12261617 Feature type: polypeptideProtein Sequence
Length: 221
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.421 | 0.21 | 0.987 | 0.156 | 1.282 | 2.785 | 0.808 | 0.452 | 0.704 | 0.978 | 1.371 | 0.799 | 0.251 | 1.566 | 1.662 | 0.84 | 0.816 | 0.686 | 0.696 | 0.133 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6327
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.367
|
0.191
|
0.020
|
0.775
|
0.142
|
0.146
|
0.239
|
0.015
|
0.062
|
0.114
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008201
|
1.000
|
1.000
|
Hsc_gene_14704.t1
|
— | — |
B1WB17.1 Partner of Y14 and mago [Xenopus tropicalis]
|
KAI1729075.1 mago binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1903259
|
GO:0005575_0.944|GO:0110165_0.939|GO:0008150_0.919|GO:0005622_0.918|GO:0009987_0.898|GO:0016020_0.871|GO:0043226_0.871|GO:0043229_0.863|GO:0003674_0.856|GO:0005488_0.856|GO:0043227_0.803|GO:0005737_0.800|GO:0071840_0.780|GO:0043231_0.774|GO:0016043_0.772|GO:0097159_0.750|GO:0003676_0.749|GO:0032991_0.745|GO:0005634_0.722|GO:0003723_0.704|GO:0043933_0.696|GO:0022411_0.677|GO:0032984_0.677|GO:0044877_0.670|GO:1903259_0.670|GO:1990448_0.650|GO:0140513_0.586|GO:0035145_0.540
|
IPR015362+36-62+|IPR036348+33-62+|IPR039333+25-219+
|
SM01273+36-62+
|
PF09282+36-62+Mago_binding
|
— |
PTHR22959+25-219+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-221
|
0.000
|
— |
1rk8_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.790
|
24234.370
|
10.449
|
10.000
|
31.222
|
3.167
|
53.846
|
46.154
|
18.100
|
13.122
|
49.321
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
540.224
|
401.534
|
435.012
|
445.926
|
509.186
|
651.022
|
409.353
|
197.314
|
324.155
|
976.857
|
697.128
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.144
|
0.160
|
0.369
|
-0.661
|
-1.824
|
1.193
|
— | — | — | — | — |
No JSON data available for plots.