Hg_chrom3_TN10mRNA_6683
Organism: Heterodera glycines Gene Locus: chr3:12270331-12272185 Feature type: polypeptideProtein Sequence
Length: 286
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.488 | 1.22 | 0.954 | 0.844 | 1.049 | 1.255 | 0.5 | 1.573 | 1.554 | 1.512 | 1.589 | 1.645 | 1.845 | 0.471 | 0.428 | 0.899 | 0.802 | 0.901 | 0.538 | 1.131 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6330
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
lysosome_vacuole
|
nucleus
|
KKLAVFHQKPKDLLGRRTK
|
— | — | — | — |
1-29
|
0.624
|
0.999
|
2.000
|
2.000
|
0.265
|
0.130
|
0.070
|
0.162
|
0.400
|
0.695
|
0.345
|
0.031
|
0.325
|
0.172
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000408
|
2.000
|
6.000
|
Hsc_gene_14714.t1;Hsc_gene_14715.t1;Hsc_gene_14715.t2;Hsc_gene_14725.t1;Hsc_gene_14733.t1;Hsc_gene_5307.t1
|
Hsc_gene_14716.t1;Hsc_gene_14716.t2
|
— | — | — |
TBU02698
|
0.490
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-286
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.626
|
33095.470
|
8.157
|
7.500
|
27.273
|
14.336
|
48.601
|
51.399
|
15.734
|
11.538
|
40.909
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
124.673
|
2.913
|
74.119
|
276.938
|
36.513
|
29.291
|
9.540
|
7.733
|
355.283
|
115.090
|
218.030
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.444
|
6.437
|
2.011
|
-2.952
|
— |
-1.608
|
-2.034
|
— | — | — | — | — | — |