Hg_chrom3_TN10mRNA_6700
Organism: Heterodera glycines Gene Locus: chr3:12369729-12372572 Feature type: polypeptideProtein Sequence
Length: 90
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.904 | 0.775 | 1.212 | 1.916 | 0.741 | 0.855 | 0.661 | 0.556 | 1.728 | 1.802 | 0.673 | 1.307 | 1.543 | 1.923 | 0.68 | 0.635 | 0.729 | 0.168 | 1.709 | 0.98 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6346
|
— | — |
0.889
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-24
|
0.985
|
1.000
|
0.000
|
0.000
|
0.544
|
0.230
|
0.036
|
0.491
|
0.173
|
0.053
|
0.102
|
0.033
|
0.196
|
0.209
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000554
|
3.000
|
4.000
|
Hsc_gene_14729.t1;Hsc_gene_14729.t2;Hsc_gene_17489.t1;Hsc_gene_9809.t1
|
Hsc_gene_14729.t1
|
— | — |
KAI3418039.1 Trehalase, variant 2 [Globodera pallida]
|
MDO8573811
|
0.420
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-90
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.498
|
10104.780
|
4.609
|
-2.500
|
20.000
|
12.222
|
35.556
|
64.444
|
8.889
|
11.111
|
48.889
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
red
|
24.041
|
0.539
|
0.000
|
0.185
|
0.000
|
1.254
|
0.405
|
30.985
|
0.000
|
92.667
|
52.952
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
4.796
|
— |
4.535
|
-6.114
|
-7.312
|
— |
-10.529
|
— | — |