Hg_chrom3_TN10mRNA_6704
Organism: Heterodera glycines Gene Locus: chr3:12416602-12419165 Feature type: polypeptideProtein Sequence
Length: 140
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.91 | 1.163 | 0.909 | 0.493 | 1.31 | 1.282 | 0.85 | 2.5 | 0.317 | 1.255 | 0.758 | 1.681 | 0.0 | 0.412 | 1.458 | 0.306 | 0.937 | 1.299 | 1.099 | 0.42 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6350
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.471
|
0.181
|
0.012
|
0.500
|
0.105
|
0.301
|
0.275
|
0.176
|
0.159
|
0.125
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008205
|
1.000
|
1.000
|
Hsc_gene_5300.t1
|
Hsc_gene_11902.t1;Hsc_gene_14732.t1;Hsc_gene_5300.t1
|
— |
Q22616.1 Biogenesis of lysosome-related organelles complex 1 subunit 1 [Caenorhabditis elegans]
|
ETN77239.1 GCN5-like protein 1 [Necator americanus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0031083
|
GO:0008150_0.906|GO:0005575_0.873|GO:0110165_0.871|GO:0009987_0.836|GO:0005622_0.779|GO:0051179_0.709|GO:0051234_0.554|GO:0006810_0.553|GO:0051641_0.541|GO:0051649_0.532|GO:0046907_0.526|GO:0032991_0.512|GO:0016020_0.508|GO:0005737_0.505
|
IPR009395+1-118+
|
— |
PF06320+5-117+GCN5-like_protein_1_(GCN5L1)
|
— |
PTHR13073+1-118+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
116-140
|
1.000
|
1-115
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.566
|
15242.190
|
7.117
|
2.500
|
30.000
|
7.857
|
47.857
|
52.143
|
17.143
|
12.857
|
53.571
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
brown
|
345.730
|
452.510
|
476.164
|
578.270
|
617.379
|
690.965
|
457.445
|
468.637
|
109.680
|
27.294
|
62.602
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.156
|
0.216
|
0.389
|
— |
0.177
|
-0.585
|
-0.664
|
— | — | — |
4.891
|
— | — |
No JSON data available for plots.