Hg_chrom3_TN10mRNA_6705
Organism: Heterodera glycines Gene Locus: chr3:12423465-12426422 Feature type: polypeptideProtein Sequence
Length: 149
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.858 | 0.936 | 1.22 | 0.694 | 1.007 | 0.688 | 0.799 | 1.342 | 0.895 | 1.36 | 1.22 | 0.79 | 1.491 | 0.903 | 0.959 | 1.151 | 0.55 | 1.119 | 1.549 | 0.79 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_6351
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.680
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.406
|
0.522
|
0.022
|
0.571
|
0.418
|
0.436
|
0.250
|
0.105
|
0.331
|
0.237
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003712
|
2.000
|
1.000
|
Hsc_gene_5298.t1
|
Hsc_gene_5298.t1
|
— |
Q9D531.1 Nucleoredoxin-like protein 2 [Mus musculus]
|
KAI1726679.1 thioredoxin-like domain-containing protein [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.833|GO:0005575_0.671|GO:0110165_0.666|GO:0005622_0.606|GO:0032501_0.523|GO:0016020_0.512|GO:0043226_0.502|GO:0005737_0.501
|
IPR012336+29-124+|IPR013766+1-148+|IPR036249+26-128+|IPR052259+23-136+
|
— |
PF13905+29-124+Thioredoxin-like
|
— |
PTHR13871+23-136+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-149
|
4fyu_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.736
|
16718.080
|
7.291
|
2.000
|
28.188
|
12.752
|
46.309
|
53.691
|
15.436
|
12.752
|
50.336
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
midnightblue
|
491.852
|
376.618
|
341.532
|
394.874
|
621.161
|
719.704
|
456.089
|
704.605
|
194.323
|
650.644
|
455.077
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.369
|
— |
0.317
|
0.621
|
0.227
|
-0.648
|
— |
-0.486
|
— | — | — | — | — |
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